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Report for CCDS13272.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13272.1 Public Homo sapiens 20 EPB41L1 24 110 108 CCDS HistoryNCBI Gene:2036Re-query CCDS DB by CCDS ID:13272.1Re-query CCDS DB by GeneID:2036See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13272.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000202028.9 ENSP00000202028.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000202028.9Link to Ensembl Protein Viewer:ENSP00000202028.5Re-query CCDS DB by Nucleotide ID:ENST00000202028Re-query CCDS DB by Protein ID:ENSP00000202028
Original member Current member EBI ENST00000441639.5 ENSP00000399214.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000441639.5Link to Ensembl Protein Viewer:ENSP00000399214.1Re-query CCDS DB by Nucleotide ID:ENST00000441639Re-query CCDS DB by Protein ID:ENSP00000399214
Original member Current member NCBI NM_001258331.2 NP_001245260.1 Accepted alive Link to Nucleotide Sequence:NM_001258331.2Link to Protein Sequence:NP_001245260.1Re-query CCDS DB by Nucleotide ID:NM_001258331Re-query CCDS DB by Protein ID:NP_001245260Link to BLAST:NP_001245260.1
Original member Current member NCBI NM_177996.2 NP_818932.1 Accepted alive Link to Nucleotide Sequence:NM_177996.2Link to Protein Sequence:NP_818932.1Re-query CCDS DB by Nucleotide ID:NM_177996Re-query CCDS DB by Protein ID:NP_818932Link to BLAST:NP_818932.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245260.1 779 Q9H4G0-2 779 100% 0 0
NP_818932.1 779 Q9H4G0-2 779 100% 0 0

Chromosomal Locations for CCDS 13272.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 36175560 36175715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36177952 36178056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36178630 36178672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36182272 36182347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36185117 36185335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36187676 36187763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36188347 36188499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36190277 36190374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36190622 36190797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36194212 36194360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36197859 36198041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36209488 36209898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36212272 36212376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36218876 36218962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36219761 36219844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36221864 36221944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36222278 36222394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36229332 36229340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2340 nt):
ATGGAGGAGAAGGACTACAGTGAGGCCGATGGCCTTTCGGAGAGGACCACGCCCAGCAAGGCCCAGAAAT
CGCCCCAGAAGATTGCCAAGAAATACAAGAGTGCCATCTGCCGGGTCACTCTGCTTGATGCCTCGGAGTA
TGAGTGTGAGGTGGAGAAACATGGCCGGGGCCAGGTGCTGTTTGACCTGGTCTGTGAACACCTCAACCTC
CTAGAGAAGGACTACTTCGGCCTGACCTTCTGTGATGCTGACAGCCAGAAGAACTGGCTGGACCCCTCCA
AGGAGATCAAGAAGCAGATCCGGAGTAGCCCCTGGAATTTTGCCTTCACAGTCAAGTTCTACCCGCCTGA
TCCTGCCCAGCTGACAGAAGACATCACAAGATACTACCTGTGCCTGCAGCTGCGGGCAGACATCATCACG
GGCCGGCTGCCATGCTCCTTTGTCACGCATGCCCTACTGGGCTCCTACGCTGTGCAGGCTGAGCTGGGTG
ACTATGATGCTGAGGAGCATGTGGGCAACTATGTCAGCGAGCTCCGCTTCGCCCCTAACCAGACCCGGGA
GCTGGAGGAGAGGATCATGGAGCTGCATAAGACATATAGGGGGATGACCCCGGGAGAAGCAGAAATCCAC
TTCTTAGAGAATGCCAAGAAGCTTTCCATGTACGGAGTAGACCTGCACCATGCCAAGGACTCTGAGGGCA
TCGACATCATGTTAGGCGTTTGTGCCAATGGCCTGCTCATCTACCGGGACCGGCTGAGAATCAACCGCTT
TGCCTGGCCCAAGATCCTCAAGATCTCCTACAAGAGGAGTAACTTCTATATCAAGATCCGGCCTGGGGAG
TATGAGCAATTTGAGAGCACAATTGGCTTTAAGCTCCCAAACCACCGGTCAGCCAAGAGACTGTGGAAGG
TCTGCATCGAGCATCATACATTCTTCCGGCTGGTGTCCCCTGAGCCCCCACCCAAGGGCTTCCTGGTGAT
GGGCTCCAAGTTCCGGTACAGTGGGAGGACCCAGGCACAGACTCGCCAGGCCAGCGCCCTCATTGACCGG
CCTGCACCCTTCTTTGAGCGTTCTTCCAGCAAACGGTACACCATGTCCCGCAGCCTTGATGGAGCAGAGT
TCTCCCGCCCAGCCTCGGTCAGCGAGAACCATGATGCAGGGCCTGACGGTGACAAGCGGGATGAGGATGG
CGAGTCTGGGGGGCAACGGTCAGAGGCTGAGGAGGGAGAGGTCAGGACTCCAACCAAGATCAAGGAGCTA
AAGTTCTTAGACAAGCCAGAAGATGTCTTGCTGAAGCACCAGGCCAGCATCAATGAGCTCAAAAGGACCC
TGAAGGAGCCCAACAGCAAACTCATCCACCGGGATCGAGACTGGGAACGGGAGCGCAGGCTGCCCTCCTC
CCCCGCCTCCCCCTCCCCCAAGGGCACCCCTGAGAAAGCCAATGAGAGAGCAGGGCTGAGGGAGGGCTCC
GAGGAGAAAGTCAAACCACCACGTCCCCGGGCCCCAGAGAGTGACACAGGCGATGAGGACCAGGACCAGG
AGAGGGACACGGTGTTCCTGAAGGACAACCACCTGGCCATTGAGCGCAAGTGCTCCAGCATCACGGTCAG
CTCTACGTCTAGCCTGGAGGCTGAGGTGGACTTCACGGTCATTGGTGACTACCATGGCAGCGCCTTCGAA
GACTTCTCCCGCAGCCTGCCTGAGCTCGACCGGGACAAAAGCGACTCGGACACTGAGGGCCTGCTGTTCT
CCCGGGATCTCAACAAGGGGGCCCCCAGCCAGGATGATGAGTCTGGGGGCATTGAGGACAGCCCGGATCG
AGGGGCCTGCTCCACCCCGGATATGCCCCAGTTTGAGCCCGTGAAAACAGAAACCATGACTGTCAGCAGT
CTGGCCATTAGAAAGAAGATTGAGCCGGAGGCCGTACTGCAGACCAGAGTCTCCGCTATGGATAACACCC
AGGAGAACAGTCTCAAGTCCGGGAAGGGGGCAGCTGCCATGATCCCAGGCCCACAGACGGTGGCCACGGA
AATCCGTTCTCTTTCTCCGATCATCGGGAAAGATGTCCTCACCAGCACCTACGGCGCCACTGCGGAAACC
CTCTCAACCTCCACCACCACCCATGTCACCAAAACTGTGAAAGGAGGGTTTTCTGAGACAAGGATCGAGA
AGCGAATCATCATTACTGGGGATGAAGATGTCGATCAAGACCAGGCCCTGGCTTTGGCCATCAAGGAGGC
CAAACTGCAGCATCCTGATATGCTGGTAACCAAAGCTGTCGTATACAGAGAAACAGACCCATCCCCAGAG
GAGAGGGACAAGAAGCCACAGGAATCCTGA

Translation (779 aa):
MEEKDYSEADGLSERTTPSKAQKSPQKIAKKYKSAICRVTLLDASEYECEVEKHGRGQVLFDLVCEHLNL
LEKDYFGLTFCDADSQKNWLDPSKEIKKQIRSSPWNFAFTVKFYPPDPAQLTEDITRYYLCLQLRADIIT
GRLPCSFVTHALLGSYAVQAELGDYDAEEHVGNYVSELRFAPNQTRELEERIMELHKTYRGMTPGEAEIH
FLENAKKLSMYGVDLHHAKDSEGIDIMLGVCANGLLIYRDRLRINRFAWPKILKISYKRSNFYIKIRPGE
YEQFESTIGFKLPNHRSAKRLWKVCIEHHTFFRLVSPEPPPKGFLVMGSKFRYSGRTQAQTRQASALIDR
PAPFFERSSSKRYTMSRSLDGAEFSRPASVSENHDAGPDGDKRDEDGESGGQRSEAEEGEVRTPTKIKEL
KFLDKPEDVLLKHQASINELKRTLKEPNSKLIHRDRDWERERRLPSSPASPSPKGTPEKANERAGLREGS
EEKVKPPRPRAPESDTGDEDQDQERDTVFLKDNHLAIERKCSSITVSSTSSLEAEVDFTVIGDYHGSAFE
DFSRSLPELDRDKSDSDTEGLLFSRDLNKGAPSQDDESGGIEDSPDRGACSTPDMPQFEPVKTETMTVSS
LAIRKKIEPEAVLQTRVSAMDNTQENSLKSGKGAAAMIPGPQTVATEIRSLSPIIGKDVLTSTYGATAET
LSTSTTTHVTKTVKGGFSETRIEKRIIITGDEDVDQDQALALAIKEAKLQHPDMLVTKAVVYRETDPSPE
ERDKKPQES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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