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Report for CCDS52477.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52477.1 Public Mus musculus 8 Irs2 23 108 98 CCDS HistoryNCBI Gene:384783Re-query CCDS DB by CCDS ID:52477.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52477.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040514.7 ENSMUSP00000038514.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040514.7Link to Ensembl Protein Viewer:ENSMUSP00000038514.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000040514Re-query CCDS DB by Protein ID:ENSMUSP00000038514
Original member Current member NCBI NM_001081212.2 NP_001074681.1 Accepted alive Link to Nucleotide Sequence:NM_001081212.2Link to Protein Sequence:NP_001074681.1Re-query CCDS DB by Nucleotide ID:NM_001081212Re-query CCDS DB by Protein ID:NP_001074681Link to BLAST:NP_001074681.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074681.1 1321 P81122 1321 100% 0 0

Chromosomal Locations for CCDS 52477.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 10987010 10987014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11004470 11008430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3966 nt):
ATGGCTAGCGCGCCCCTGCCTGGGCCCCCCGCGTCGGCGGGCGGGGACGGCCCGAACCTCAATAACAACA
ACAACAACAACAACCACAGCGTGCGCAAGTGCGGCTACCTGCGCAAGCAGAAGCACGGCCACAAGCGCTT
TTTCGTGTTGCGCGGCCCCGGCACGGGCGGCGACGAGGCATCCGCGGCTGGGGGGTCGCCGCCGCAGCCT
CCGCGGCTGGAGTACTACGAGAGCGAGAAGAAGTGGAGGAGCAAGGCGGGCGCGCCGAAGCGAGTGATCG
CGCTCGACTGCTGTCTGAACATCAACAAGCGCGCGGACGCCAAGCACAAGTACCTGATCGCCCTCTACAC
CAAGGACGAGTACTTCGCTGTAGCGGCGGAGAACGAGCAGGAGCAGGAGGGCTGGTACCGCGCACTCACC
GACTTGGTCAGCGAAGGCCGCTCTGGCGAGGGGGGCTCGGGCACCACCGGAGGCTCTTGCAGCGCCTCTC
TCCCGGGCGTCCTGGGCGGCTCAGCGGGCGCCGCTGGCTGCGATGACAACTACGGGCTCGTGACACCCGC
CACGGCCGTCTACCGCGAGGTGTGGCAGGTGAACCTGAAACCTAAGGGACTGGGCCAGAGCAAGAACCTG
ACTGGTGTATACCGCCTATGCCTGTCTGCGCGCACCATCGGCTTCGTGAAGCTCAATTGCGAACAGCCGT
CGGTGACGCTGCAGCTTATGAACATTCGCCGCTGCGGCCACTCGGACAGCTTCTTCTTCATCGAGGTGGG
CCGTTCGGCCGTCACCGGTCCCGGGGAGCTGTGGATGCAAGCCGACGACTCGGTGGTGGCGCAGAACATC
CATGAGACCATCCTAGAAGCTATGAAGGCACTCAAAGAGCTCTTCGAGTTCCGGCCTCGCAGCAAGAGTC
AGTCGTCCGGGTCGTCAGCCACGCATCCCATCAGCGTGCCGGGCGCGCGCCGCCACCACCACCTAGTCAA
CCTACCCCCTAGCCAGACCGGCCTGGTGCGCCGCTCGCGCACTGACAGCCTGGCGGCCACCCCCCCAGCA
GCCAAGTGCACTTCGTGCCGGGTTCGTACGGCCAGCGAGGGCGACGGCGGCGCGGCAGGCGGGGCCGGGA
CGGCAGGAGGCAGGCCGATGTCGGTGGCAGGGAGCCCCCTGAGTCCCGGGCCGGTGCGCGCGCCCCTTAG
CCGCTCGCACACCCTGAGCGCCGGCTGCGGAGGCCGCCCGAGCAAAGTGACTCTGGCGCCGGCAGGGGGA
GCCCTGCAACACAGCCGCTCCATGTCCATGCCCGTGGCGCACTCACCTCCTGCAGCCACCAGCCCAGGCA
GCCTGTCCTCCAGCAGTGGGCACGGCTCGGGCTCCTACCCGCTGCCACCTGGCTCCCACCCGCACCTGCC
TCATCCACTGCATCACCCCCAAGGCCAGCGTCCGTCCAGCGGTAGTGCCTCCGCCTCGGGCTCCCCCAGC
GACCCGGGTTTCATGTCCCTTGACGAGTATGGCTCCAGCCCTGGCGACCTGAGAGCCTTCAGTAGCCACA
GGAGCAACACACCCGAGTCAATAGCGGAGACCCCGCCAGCCAGAGATGGCAGTGGGGGCGAACTCTATGG
GTACATGAGCATGGATAGACCCCTGAGCCACTGTGGCCGCCCTTACCGTAGGGTCTCAGGGGATGGGGCC
CAGGACCTGGATAGAGGACTGAGGAAGAGGACTTATTCCCTAACCACGCCTGCCAGGCAGCGGCAGGTAC
CTCAGCCTTCCTCTGCCTCTCTAGATGAATACACTCTCATGAGGGCCACCTTCTCTGGTAGTTCAGGTCG
CCTCTGCCCATCCTTCCCTGCGTCCTCTCCCAAAGTGGCCTACAACCCTTACCCAGAGGACTATGGAGAC
ATTGAGATTGGTTCTCACAAGAGTTCCAGCAGTAACCTGGGGGCAGATGATGGCTACATGCCCATGACCC
CTGGGGCAGCCCTTAGGAGTGGTGGTCCCAATAGCTGCAAGAGCGATGACTACATGCCCATGAGCCCCAC
AAGCGTGTCTGCTCCCAAGCAGATCCTGCAGCCACGCTTGGCAGCGGCCTTGCCCCCTTCCGGAGCAGCC
GTGCCAGCACCCCCTTCAGGGGTGGGCAGGACCTTCCCAGTAAACGGAGGTGGCTACAAAGCCAGCTCCC
CAGCGGAGAGCTCCCCAGAAGACAGTGGGTACATGCGAATGTGGTGTGGCTCCAAGCTGTCTATGGAGAA
CCCAGACCCTAAGCTACTCCCCAACGGGGACTACCTCAACATGTCCCCCAGCGAGGCAGGCACTGCAGGG
ACCCCACCTGACTTCTCAGCAGCTTTGCGTGGAGGCAGTGAAGGCCTCAAAGGCATCCCGGGCCACTGCT
ACAGCTCTTTGCCCCGCTCTTATAAGGCTCCCTGTTCCTGCAGCGGAGACAATGACCAGTATGTGCTCAT
GAGCTCCCCTGTGGGCCGGATCTTGGAAGAGGAGAGACTGGAGCCCCAGGCCACCCCAGGGGCTGGCACC
TTTGGGGCAGCTGGTGGTAGTCATACCCAGCCTCATCACTCAGCAGTGCCTTCCTCCATGAGGCCGAGTG
CCATCGGTGGCCGCCCTGAGGGCTTCCTGGGCCAGCGATGTCGGGCAGTGCGGCCTACACGCCTATCGCT
AGAGGGACTGCAGACCCTTCCCAGCATGCAAGAGTACCCTCTACCCACAGAGCCCAAGAGCCCTGGCGAG
TACATCAACATTGACTTTGGTGAGGCAGGTACCCGTCTGTCTCCGCCTGCCCCCCCACTACTGGCATCCG
CGGCCTCATCTTCTTCACTGCTCTCAGCTAGTAGTCCTGCTTCATCCCTGGGTTCAGGAACCCCAGGCAC
CAGCAGCGACAGCCGGCAGCGCTCTCCACTCTCTGACTATATGAACCTGGACTTCAGTTCTCCCAAGTCC
CCCAAGCCTAGCACCCGCAGTGGGGACACAGTAGGCTCCATGGATGGCCTTCTCTCTCCAGAGGCTTCAT
CCCCATACCCACCACTGCCCCCACGTCCTTCCACTTCCCCTTCCTCCTTACAGCAGCCTCTGCCACCTGC
CCCGGGAGACCTATACCGCCTGCCTCCAGCATCAGCTGCCACTTCCCAGGGTCCCACTGCTGGCTCCTCA
ATGTCCTCCGAGCCTGGGGATAATGGTGACTATACCGAGATGGCCTTTGGTGTGGCTGCAACCCCGCCAC
AACCTATCGTGGCACCTCCAAAGCCAGAAGGTGCCCGAGTGGCCAGTCCCACATCGGGCTTGAAGCGGCT
AAGTCTCATGGATCAGGTATCTGGGGTGGAGGCTTTCCTTCAAGTCAGCCAGCCCCCTGACCCCCACCGG
GGTGCTAAGGTCATCCGTGCAGACCCACAGGGGGGACGTCGTCGCCACAGTTCAGAGACCTTTTCCTCTA
CCACCACCGTCACCCCAGTGTCCCCATCCTTTGCCCACAATTCCAAGCGCCACAATTCGGCCTCTGTGGA
AAATGTCTCACTCAGGAAAAGCAGTGAAGGCAGCAGTACCCTGGGAGGAGGTGATGAGCCGCCCACATCC
CCAGGACAGGCACAGCCCTTGGTGGCTGTGCCCCCAGTGCCACAGGCTAGGCCGTGGAACCCCGGTCAGC
CCGGAGCTTTGATTGGCTGTCCTGGAGGCAGCAGTTCTCCCATGCGCAGAGAGACCTCCGTGGGTTTCCA
GAACGGCCTCAACTATATCGCCATCGATGTGAGAGGCGAGCAGGGGTCCTTGGCGCAGTCTCAGCCGCAG
CCAGGAGACAAGAACTCCTGGAGCCGGACCCGTAGCCTTGGGGGGCTCCTCGGCACCGTCGGAGGCTCTG
GCGCCAGCGGAGTGTGTGGGGGTCCAGGCACTGGAGCTTTGCCCTCTGCCAGCACCTATGCAAGCATCGA
CTTCCTGTCCCATCACTTGAAGGAAGCCACAGTCGTGAAAGAGTGA

Translation (1321 aa):
MASAPLPGPPASAGGDGPNLNNNNNNNNHSVRKCGYLRKQKHGHKRFFVLRGPGTGGDEASAAGGSPPQP
PRLEYYESEKKWRSKAGAPKRVIALDCCLNINKRADAKHKYLIALYTKDEYFAVAAENEQEQEGWYRALT
DLVSEGRSGEGGSGTTGGSCSASLPGVLGGSAGAAGCDDNYGLVTPATAVYREVWQVNLKPKGLGQSKNL
TGVYRLCLSARTIGFVKLNCEQPSVTLQLMNIRRCGHSDSFFFIEVGRSAVTGPGELWMQADDSVVAQNI
HETILEAMKALKELFEFRPRSKSQSSGSSATHPISVPGARRHHHLVNLPPSQTGLVRRSRTDSLAATPPA
AKCTSCRVRTASEGDGGAAGGAGTAGGRPMSVAGSPLSPGPVRAPLSRSHTLSAGCGGRPSKVTLAPAGG
ALQHSRSMSMPVAHSPPAATSPGSLSSSSGHGSGSYPLPPGSHPHLPHPLHHPQGQRPSSGSASASGSPS
DPGFMSLDEYGSSPGDLRAFSSHRSNTPESIAETPPARDGSGGELYGYMSMDRPLSHCGRPYRRVSGDGA
QDLDRGLRKRTYSLTTPARQRQVPQPSSASLDEYTLMRATFSGSSGRLCPSFPASSPKVAYNPYPEDYGD
IEIGSHKSSSSNLGADDGYMPMTPGAALRSGGPNSCKSDDYMPMSPTSVSAPKQILQPRLAAALPPSGAA
VPAPPSGVGRTFPVNGGGYKASSPAESSPEDSGYMRMWCGSKLSMENPDPKLLPNGDYLNMSPSEAGTAG
TPPDFSAALRGGSEGLKGIPGHCYSSLPRSYKAPCSCSGDNDQYVLMSSPVGRILEEERLEPQATPGAGT
FGAAGGSHTQPHHSAVPSSMRPSAIGGRPEGFLGQRCRAVRPTRLSLEGLQTLPSMQEYPLPTEPKSPGE
YINIDFGEAGTRLSPPAPPLLASAASSSSLLSASSPASSLGSGTPGTSSDSRQRSPLSDYMNLDFSSPKS
PKPSTRSGDTVGSMDGLLSPEASSPYPPLPPRPSTSPSSLQQPLPPAPGDLYRLPPASAATSQGPTAGSS
MSSEPGDNGDYTEMAFGVAATPPQPIVAPPKPEGARVASPTSGLKRLSLMDQVSGVEAFLQVSQPPDPHR
GAKVIRADPQGGRRRHSSETFSSTTTVTPVSPSFAHNSKRHNSASVENVSLRKSSEGSSTLGGGDEPPTS
PGQAQPLVAVPPVPQARPWNPGQPGALIGCPGGSSSPMRRETSVGFQNGLNYIAIDVRGEQGSLAQSQPQ
PGDKNSWSRTRSLGGLLGTVGGSGASGVCGGPGTGALPSASTYASIDFLSHHLKEATVVKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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