NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13427.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13427.1 Public Homo sapiens 20 UBE2V1 24 110 108 CCDS HistoryNCBI Gene:7335Re-query CCDS DB by CCDS ID:13427.1Re-query CCDS DB by GeneID:7335See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13427.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000415862.6 ENSP00000407770.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000415862.6Link to Ensembl Protein Viewer:ENSP00000407770.2Re-query CCDS DB by Nucleotide ID:ENST00000415862Re-query CCDS DB by Protein ID:ENSP00000407770
Original member Current member NCBI NM_001257394.2 NP_001244323.1 Accepted alive Link to Nucleotide Sequence:NM_001257394.2Link to Protein Sequence:NP_001244323.1Re-query CCDS DB by Nucleotide ID:NM_001257394Re-query CCDS DB by Protein ID:NP_001244323Link to BLAST:NP_001244323.1
Original member Current member NCBI NM_022442.6 NP_071887.1 Accepted alive Link to Nucleotide Sequence:NM_022442.6Link to Protein Sequence:NP_071887.1Re-query CCDS DB by Nucleotide ID:NM_022442Re-query CCDS DB by Protein ID:NP_071887Link to BLAST:NP_071887.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001244323.1 103 Q13404-6 103 100% 0 0
NP_071887.1 103 Q13404-6 103 100% 0 0

Chromosomal Locations for CCDS 13427.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 50082768 50082914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50084129 50084254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50115485 50115523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (312 nt):
ATGAAGGAAGACTTGAACCTAGAAAATTTCACTGCAAAGACAATTTATGAAAACCGAATATACAGCCTTA
AAATAGAATGTGGACCTAAATACCCAGAAGCACCCCCCTTTGTAAGATTTGTAACAAAAATTAATATGAA
TGGAGTAAATAGTTCTAATGGAGTGGTGGACCCAAGAGCCATATCAGTGCTAGCAAAATGGCAGAATTCA
TATAGCATCAAAGTTGTCCTGCAAGAGCTTCGGCGCCTAATGATGTCTAAAGAAAATATGAAACTCCCTC
AGCCGCCCGAAGGACAGTGTTACAGCAATTAA

Translation (103 aa):
MKEDLNLENFTAKTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNS
YSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH