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Report for CCDS12522.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12522.1 Public Homo sapiens 19 RINL 24 110 108 CCDS HistoryNCBI Gene:126432Re-query CCDS DB by CCDS ID:12522.1Re-query CCDS DB by GeneID:126432See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12522.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000598904.5 ENSP00000469568.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000598904.5Link to Ensembl Protein Viewer:ENSP00000469568.1Re-query CCDS DB by Nucleotide ID:ENST00000598904Re-query CCDS DB by Protein ID:ENSP00000469568
Original member Current member NCBI NM_198445.4 NP_940847.1 Accepted alive Link to Nucleotide Sequence:NM_198445.4Link to Protein Sequence:NP_940847.1Re-query CCDS DB by Nucleotide ID:NM_198445Re-query CCDS DB by Protein ID:NP_940847Link to BLAST:NP_940847.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940847.1 452 Q6ZS11-2 452 100% 0 0

Chromosomal Locations for CCDS 12522.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 38869104 38869166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38869247 38869410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38869573 38869704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38869943 38870260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38870570 38870992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38871078 38871227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38871647 38871711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38871798 38871841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGCCAGACCTGCCCCATCTCCTGGCCTTTCTATCAGCCAGCAGGGATGTTCTGCCCAGAACCCTGCTCT
TGCCCCCTCCCACTCTAGGGCCCAGAGATGAACACACAGATCCTGTGCAGATCGGCAGGGTCCAACAGGA
CACCCCAGGGAAGGTGCTTTCCATTGTGAACCAGCTCTACCTGGAGACCCACAGAGGCTGGGGGAGGGAG
CAGACCCCTCAAGAAACAGAGCCAGAGGCTGCTCAGAGACATGATCCAGCCCCCAGGAACCCTGCGCCTC
ACGGGGTCTCCTGGGTGAAAGGCCCGCTCAGCCCGGAAGTGGACCATCCTGGGCCGGCTCTCGCCAGCCT
ACTGGAAGAGGAGGAGGAAGACCTTGAAGGAAAGGAGGAAGGAAGGGAGGACGACCCTGAAGAGGAAGGC
CCTGAGGACGTGCTCACCATTCACGTCCAGTCTCTGGTCAGGGCCCGGAGCAGCTACGTGGCCAGGCAGT
ACCGAAGCCTTCGGGTGCGCATCGCCTCAGATTCTGGGGGTCCCCACGGGTCTGGGGACCCGGCCACGGA
GCTGCTTCAGGATGTGCGGCACCTCCTTACTGACCTCCAGGATCACCTGGCAAAGGACTCCTACATCAGG
GCTGTCTTTGGAAGCAGGGGTCCTGGGCTCCCCAAGAAGGACGAGGATCCAGGCCCCGCGCTGGAGACGG
CGGTGTGCCAGGCGGTGCTGGCGCCCCTGAAGCCGGCCCTGTGGACACGACTCCGCACACTCCGAGCACC
GGAGCTGCGGCGGCTGCGGCGGCGACAGACAGCCCTGCGGGCGGGGGCGGGGCCTCCGGGGGCACAGGGG
CCGGGACCGGAAGGGCAGAGCCCCGCCCCCGCCTTGCGGAGCCGCATCCACGAGCGCCTTGCGCACCTCC
ACGCTGCCTGCGCCCCGCGCCGCAAGGTGGCGCTCCTCTTGGAGGTGTGCAGAGATGTCTATGCGGGCCT
GGCTCGAGGCGAGAACCAAGATCCCCTGGGGGCCGACGCCTTCCTGCCGGCGCTGACCGAGGAACTCATC
TGGAGCCCGGACATTGGGGACACGCAGCTGGACGTAGAGTTTCTTATGGAGCTCTTAGATCCAGATGAGC
TGCGGGGAGAGGCTGGGTACTACCTGACCACGTGGTTTGGGGCGCTGCACCACATTGCCCACTACCAGCC
CGAAACAGACCGCGCTCCCCGGGGGCTCAGCTCCGAGGCCCGCGCCTCCCTGCACCAGTGGCACCGCAGG
CGGACGCTGCACAGAAAGGATCATCCCAGAGCCCAGGCCAACCTGCCCTTTAAGGAGCCATGGGCAGAAG
AGACTGTGACAGGGACCAGTGACAACTAG

Translation (452 aa):
MPDLPHLLAFLSASRDVLPRTLLLPPPTLGPRDEHTDPVQIGRVQQDTPGKVLSIVNQLYLETHRGWGRE
QTPQETEPEAAQRHDPAPRNPAPHGVSWVKGPLSPEVDHPGPALASLLEEEEEDLEGKEEGREDDPEEEG
PEDVLTIHVQSLVRARSSYVARQYRSLRVRIASDSGGPHGSGDPATELLQDVRHLLTDLQDHLAKDSYIR
AVFGSRGPGLPKKDEDPGPALETAVCQAVLAPLKPALWTRLRTLRAPELRRLRRRQTALRAGAGPPGAQG
PGPEGQSPAPALRSRIHERLAHLHAACAPRRKVALLLEVCRDVYAGLARGENQDPLGADAFLPALTEELI
WSPDIGDTQLDVEFLMELLDPDELRGEAGYYLTTWFGALHHIAHYQPETDRAPRGLSSEARASLHQWHRR
RTLHRKDHPRAQANLPFKEPWAEETVTGTSDN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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