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Report for CCDS36060.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36060.1 Public Mus musculus 10 Atxn7l3b 23 108 98 CCDS HistoryNCBI Gene:382423Re-query CCDS DB by CCDS ID:36060.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36060.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099276.3 ENSMUSP00000096882.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099276.3Link to Ensembl Protein Viewer:ENSMUSP00000096882.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099276Re-query CCDS DB by Protein ID:ENSMUSP00000096882
Original member Current member NCBI NM_001033474.2 NP_001028646.2 Accepted alive Link to Nucleotide Sequence:NM_001033474.2Link to Protein Sequence:NP_001028646.2Re-query CCDS DB by Nucleotide ID:NM_001033474Re-query CCDS DB by Protein ID:NP_001028646Link to BLAST:NP_001028646.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028646.2 97 Q3UD01 97 100% 0 0

Chromosomal Locations for CCDS 36060.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 112928429 112928722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGGAGGAGATTTCGTTGGCCAACCTGGATACTAACAAGCTGGAGGCCATCGCCCAGGAGATCTATGTAG
ACCTGATAGAGGATTCCTGCCTGGGCTTCTGCTTTGAGGTGCACCGGGCGGTCAAGTGTGGCTACTTCTA
CCTGGAGTTTGCAGACACTGGGAGCGTGAAGGATTTCGGCATCCAGCCAGTGGAGGACAAAGGCGCGTGC
CGCCTCCCGCTCTGCTCCCTTCCTGGGGATCCCGGGGACGGGCCCCAGACGGAGCTGCAGCGTTCACCTC
CGGAATTCCAGTAG

Translation (97 aa):
MEEISLANLDTNKLEAIAQEIYVDLIEDSCLGFCFEVHRAVKCGYFYLEFADTGSVKDFGIQPVEDKGAC
RLPLCSLPGDPGDGPQTELQRSPPEFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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