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Report for CCDS36045.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36045.1 Public Mus musculus 10 Poc1b 23 108 98 CCDS HistoryNCBI Gene:382406Re-query CCDS DB by CCDS ID:36045.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36045.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020113.14 ENSMUSP00000020113.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020113.14Link to Ensembl Protein Viewer:ENSMUSP00000020113.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000020113Re-query CCDS DB by Protein ID:ENSMUSP00000020113
Original member Current member NCBI NM_027740.7 NP_082016.1 Accepted alive Link to Nucleotide Sequence:NM_027740.7Link to Protein Sequence:NP_082016.1Re-query CCDS DB by Nucleotide ID:NM_027740Re-query CCDS DB by Protein ID:NP_082016Link to BLAST:NP_082016.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082016.1 476 Q8BHD1 476 100% 0 0

Chromosomal Locations for CCDS 36045.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 99107209 99107223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99107792 99107876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99124831 99125002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99129483 99129662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99144235 99144342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99144479 99144594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99152801 99152934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99155069 99155137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99156202 99156351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99164869 99164949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99192782 99192997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99196626 99196730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGGCCTCCGGCCTGGAGGATCCGATTCTGGAACGTTCTTTTAAAGGTCACAAAGCTGCCATCACCTCCG
CTGACTTCAGCCCCAACTGCAAACAAATTGCTACTGCTTCGTGGGACACCTTTCTCATGCTATGGAGTTT
GAAGCCACACGCTAGAGCTTACAGATACGTGGGCCACAAGGATGTTGTAACCAGCCTGCAGTTCTCGCCA
CAAGGAAACCTATTAGCCTCTGCCTCGAGGGACAGAACTGTTAGACTGTGGGTTCTTGATAGGAAAGGGA
AGTCTTCAGAATTTAAAGCACACACAGCCCCAGTTCGGAGTGTGGACTTTTCCGCTGATGGCCAGCTTTT
GGTTACAGCATCTGAAGATAAATCCATTAAAGTGTGGAGTATGTTCCGTCAGCGCTTCCTCTACTCCCTG
TATCGACACACACACTGGGTACGCTGCGCCAAATTTTCACCTGACGGAAGGTTGATCGTGTCATGTAGTG
AGGATAAAACTATTAAAATTTGGGACACTACCAATAAGCAGTGCGTTAATAACTTCTCAGACTCTGTAGG
ATTTGCAAATTTTGTGGATTTTAACCCCAACGGCACATGCATCGCTTCAGCAGGTTCTGACCATGCTGTG
AAAATCTGGGATATAAGAATGAACAAATTACTCCAGCACTACCAAGTTCACAGCTGCGGTGTGAACTGTC
TGTCCTTCCATCCTTTGGGTAACAGCCTTGTCACCGCCTCTTCTGATGGAACAGTTAAGATGCTGGATCT
CATAGAGGGAAGACTCATATACACACTTCAAGGACATACGGGGCCCGTCTTTACCGTTTCATTTTCGAAG
GACGGAGAGCTGCTTACATCAGGCGGGGCAGATGCGCAGGTCTTGATTTGGAGGACCAACTTCATTCACC
TGCACTGTAAAGATCCTAAAAGAAACCTCAAAAGACTGCACTTTGAGGCCTCCCCACACCTTCTTGACAT
CTACCCACGGTCACCGCATTCCCATGAAGACAGAAAGGAGACTATTGAAATTAATCCCAAGCGTGAGGTG
ATGGATTTGCAGAGCTCGTCTCCCCCCGTGGTGGATGTCCTTTCTTTCGATTCAACCACAATGACGGATT
CCACCTATCGAGCTGTGCCAGGCAAGGGTGAAGACATCTGTAGGTATTTCTTGAACCCTTTGTTAATGCC
AGAATGTTCATCCACAACTGTGAAAAAGAGACCAGAAGATGTAAGTGATGTGCCCTCCGAAAGCCTGAGG
AGCGTCCCGCTGGCGGTGGCTGACGCACTGGAGCACATTATGGAACAACTCAACATCCTAACCCAGACTG
TTTCAATTCTGGAGCAGCGACTGTCTTTGACAGAAGATAAGCTGAGAGACTGCCTTGAGAATCAGCAAAA
GCTTTTCAGCGCTGTCCAACAGAAGAGCTGA

Translation (476 aa):
MASGLEDPILERSFKGHKAAITSADFSPNCKQIATASWDTFLMLWSLKPHARAYRYVGHKDVVTSLQFSP
QGNLLASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLVTASEDKSIKVWSMFRQRFLYSL
YRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHAV
KIWDIRMNKLLQHYQVHSCGVNCLSFHPLGNSLVTASSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSK
DGELLTSGGADAQVLIWRTNFIHLHCKDPKRNLKRLHFEASPHLLDIYPRSPHSHEDRKETIEINPKREV
MDLQSSSPPVVDVLSFDSTTMTDSTYRAVPGKGEDICRYFLNPLLMPECSSTTVKKRPEDVSDVPSESLR
SVPLAVADALEHIMEQLNILTQTVSILEQRLSLTEDKLRDCLENQQKLFSAVQQKS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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