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Report for CCDS30087.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30087.1 Public Mus musculus X Rhox12 23 108 98 CCDS HistoryNCBI Gene:382282Re-query CCDS DB by CCDS ID:30087.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30087.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096453.11 ENSMUSP00000094191.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096453.11Link to Ensembl Protein Viewer:ENSMUSP00000094191.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000096453Re-query CCDS DB by Protein ID:ENSMUSP00000094191
Original member Current member EBI ENSMUST00000115146.8 ENSMUSP00000110799.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115146.8Link to Ensembl Protein Viewer:ENSMUSP00000110799.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115146Re-query CCDS DB by Protein ID:ENSMUSP00000110799
Original member Current member NCBI NM_001025083.2 NP_001020254.1 Accepted alive Link to Nucleotide Sequence:NM_001025083.2Link to Protein Sequence:NP_001020254.1Re-query CCDS DB by Nucleotide ID:NM_001025083Re-query CCDS DB by Protein ID:NP_001020254Link to BLAST:NP_001020254.1

Chromosomal Locations for CCDS 30087.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 38104178 38104273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38107128 38107173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38107725 38108143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGGCTCTCGAACCCCATCATGTGGACCCCAATTTCTACAAACTGGGGGAGAATGAGATCGAAGTGACCC
TTGATGCTGATCAAGAGGCTGATGGAGCAGCAGAGGGAGGCAGCTTTGGAGACGGTTCTCTAAATGGCTC
AGACAAATTAAAGTGCCAGGGCATCCCAGACGACAAGGATGATGTGATCTACGTTGGAGAATTGAAGAAC
ATTGGCAATGACATCAAAGACGAGTGCCATGGGAGCCATCAAGGGTCTGGAGATCCACAGCCGGAGGAGA
AGCAGAAGAACTCGGCGGCTGCCAGAGTTCCACAGGTCCGGCGCACAAGGCCACGGATCCAGTTGGGTTT
CACGCCCAGGCAACTGAATGAACTGGAAGACTTTTTTGAAAAAACTAAGTACCCTGATGCACTCACAAGG
AAGAACCTTGCAAAGCACTTGTACCTAGCAGAATCCAAAGTTCAGAGATGGTTTAAGAAAAGAAGAGCCC
ATTATAGGAAAGAACAGCAGTCTCAAGTGCTGCAGTGTGCATCTGCTGATGGCCAGGATGCCATGCAGTG
A

Translation (186 aa):
MALEPHHVDPNFYKLGENEIEVTLDADQEADGAAEGGSFGDGSLNGSDKLKCQGIPDDKDDVIYVGELKN
IGNDIKDECHGSHQGSGDPQPEEKQKNSAAARVPQVRRTRPRIQLGFTPRQLNELEDFFEKTKYPDALTR
KNLAKHLYLAESKVQRWFKKRRAHYRKEQQSQVLQCASADGQDAMQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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