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Report for CCDS23553.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23553.1 Public Mus musculus 9 Fbxw15 23 108 98 CCDS HistoryNCBI Gene:382105Re-query CCDS DB by CCDS ID:23553.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23553.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056745.11 ENSMUSP00000058175.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056745.11Link to Ensembl Protein Viewer:ENSMUSP00000058175.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000056745Re-query CCDS DB by Protein ID:ENSMUSP00000058175
Original member Current member NCBI NM_199036.2 NP_950201.2 Accepted alive Link to Nucleotide Sequence:NM_199036.2Link to Protein Sequence:NP_950201.2Re-query CCDS DB by Nucleotide ID:NM_199036Re-query CCDS DB by Protein ID:NP_950201Link to BLAST:NP_950201.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_950201.2 466 L7N1X6-1 466 100% 0 0

Chromosomal Locations for CCDS 23553.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 109552664 109552769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109555147 109555271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109555561 109555739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109557079 109557289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109558146 109558304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109559719 109559928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109565335 109565453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109566766 109566929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109567113 109567150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109568141 109568230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGGCGATCCATTTACCTTGTTTGCCGATGATGAAAATCCTCTCCTATCTGGATGCCTACAGTTTGCTAC
AGGCTGCCCAAGTGAACAAGGACTGGAATGAACTTGCCAGCAGTGATGTCCTGTGGAGGAAATTGTGTCA
GAAGAGATGGCTCTACTGTGACATGGATACCCTGCAGCTCCAGGGCAAAGAGACATGGAAGCAGTTCTTC
ATTGATCGAATATGGCAAGAACGTGCCAAGTTCCGTGCAAAGGCAAAAGATTTCACTTACAAGGAAATTC
CTTTGATGTGTGGACTTTTTGGATATGCATGTTATATCTCAGGGTGTGGCTTAACAAGAAAGGGACAAGA
CAAGTCTGTTGTCTGTATGGTGAATTCCAAGAATACAATTTCCACCTGGGATGTTCACAAGAGCGTTATA
ACCTGGAAAAGCCCAGAACAGCCGGCAAGTATCAAGCTGTTGACTACCCTCCCTGAGATGCACATTGCAG
TCACTGTAGATATTCAATCAACTATCAAACTGTGGGACTGTCACAACAGGGAAGCTCTGGCGACTAACAA
CCTGAAGTCTCCATGCAAATCACTGAAAGCTGTCTTTACCAAGGATGGCCCAATTGTCTTGATAGGTGAT
ACCTTGGGTAACATCCACATCTTTAGGATTCCAGATTTATACCTCATTTCCACAGTCAATGTATTGCCAT
ATGGTTTTGATGGAATCTACTGTTCTCCTCAGAAGAAATGGGTCTTACTGAGTAAGAAACACCCACATAT
TTTGCCAAAGGTGTTTTACATGAGCAGCTTTCTGAGGACATCAGAATTCTCTGCCCCTGTGTCTACCGTT
CTCAAATTATCCTTATATGAAAGAGTCTTCTGGACACCAAGAAGGGAAGACAGGATAACCCTGATGTCCA
GAAGTGGTTTCCCCCAAGTCAAAATGTTTGAAACATATGATATCAAGCTGGAAGAGTTTGGGAACAAAAG
AATTGTTAAAGGAAAATTGATAGCAAGCTTCGAGTTACAATGTCACAAGGTGAACCCACAGAGGTTTGGA
GTCAGTGATAAGAACGTGATTGTTTGTTCAACTGAATCCTCTCTCTTGCTCTTCGACATAAATGGTCTCC
GTCTAAAGACATTTCAGTACTGCCCAGAAATGATCGTGAAACTCAGTGTGGACCCCCTTCATGTCATTGT
CATTTGTAACACTGGCTCTATGGATGTGTATGCATGGGAGGAGAGAAGCCTGCTGCTCAGGAAGTGTTAT
CGACTGCACATTGAGAGACCTCTGCCACTGTACGGCTTCATTTATAAAGCAGCATGTGATGATGTGAGCA
TAATTCAGTTGATTACAGATGAGCTCAGCCTCAGCTCTCTGACTTCATATGCCTTGAACATCTGCTCTTG
A

Translation (466 aa):
MAIHLPCLPMMKILSYLDAYSLLQAAQVNKDWNELASSDVLWRKLCQKRWLYCDMDTLQLQGKETWKQFF
IDRIWQERAKFRAKAKDFTYKEIPLMCGLFGYACYISGCGLTRKGQDKSVVCMVNSKNTISTWDVHKSVI
TWKSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNNLKSPCKSLKAVFTKDGPIVLIGD
TLGNIHIFRIPDLYLISTVNVLPYGFDGIYCSPQKKWVLLSKKHPHILPKVFYMSSFLRTSEFSAPVSTV
LKLSLYERVFWTPRREDRITLMSRSGFPQVKMFETYDIKLEEFGNKRIVKGKLIASFELQCHKVNPQRFG
VSDKNVIVCSTESSLLLFDINGLRLKTFQYCPEMIVKLSVDPLHVIVICNTGSMDVYAWEERSLLLRKCY
RLHIERPLPLYGFIYKAACDDVSIIQLITDELSLSSLTSYALNICS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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