NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52869.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52869.1 Public Mus musculus 9 Omt2b 23 108 98 CCDS HistoryNCBI Gene:382088Re-query CCDS DB by CCDS ID:52869.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52869.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043734.11 ENSMUSP00000036132.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043734.11Link to Ensembl Protein Viewer:ENSMUSP00000036132.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000043734Re-query CCDS DB by Protein ID:ENSMUSP00000036132
Original member Current member EBI ENSMUST00000187667.6 ENSMUSP00000139767.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187667.6Link to Ensembl Protein Viewer:ENSMUSP00000139767.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187667Re-query CCDS DB by Protein ID:ENSMUSP00000139767
Original member Current member NCBI NM_205822.2 NP_991391.2 Accepted alive Link to Nucleotide Sequence:NM_205822.2Link to Protein Sequence:NP_991391.2Re-query CCDS DB by Nucleotide ID:NM_205822Re-query CCDS DB by Protein ID:NP_991391Link to BLAST:NP_991391.2

Chromosomal Locations for CCDS 52869.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 78328138 78328264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78328522 78328692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78329292 78329353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (360 nt):
ATGATGTCTCAACTTCACATATGTTATGGCCCTGTTTGTGAGATGCAACATCACCTTCCATCTTTCCTGG
ACCCCCTGGAGTTTGTGATTGTGTACCTAGAGACCTGGGTCTACAAAGGATTGTTTGATTTGAGGCCGGA
ACTATTGCTATACTTTTTGAATATGCACGTTCTTATTACATCTGATGGTGATTTAAGTGAAACAGTCCTG
TACATTTATGGATCCAAAGGGATTAGGATCTTTGCAATGTTTGTGATTGTGTCGCTAGCTTGCAATCTCC
GGACCAAGCGAAATCGAGCCAGAGCCTGGGCCAGAGGCCTGCAAAGCCCTGTGTGGTGGAACCGGAGGTA
CTTCATTTAA

Translation (119 aa):
MMSQLHICYGPVCEMQHHLPSFLDPLEFVIVYLETWVYKGLFDLRPELLLYFLNMHVLITSDGDLSETVL
YIYGSKGIRIFAMFVIVSLACNLRTKRNRARAWARGLQSPVWWNRRYFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH