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Report for CCDS90529.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90529.1 Public Mus musculus 9 Prdm10 23 108 98 CCDS HistoryNCBI Gene:382066Re-query CCDS DB by CCDS ID:90529.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90529.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117389.7 ENSMUSP00000112588.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117389.7Link to Ensembl Protein Viewer:ENSMUSP00000112588.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117389Re-query CCDS DB by Protein ID:ENSMUSP00000112588
Original member Current member NCBI NM_199315.2 NP_955019.1 Accepted alive Link to Nucleotide Sequence:NM_199315.2Link to Protein Sequence:NP_955019.1Re-query CCDS DB by Nucleotide ID:NM_199315Re-query CCDS DB by Protein ID:NP_955019Link to BLAST:NP_955019.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955019.1 341 Q3UTQ7-2 341 100% 0 0

Chromosomal Locations for CCDS 90529.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 31313553 31313621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31316170 31316334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31318512 31318571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31325627 31325834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31327316 31327557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31329662 31329943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGGATCCCAAAGATGAAAGCGCTCATGTGTGGCCAACGTCTGCAGACCATGAACAGAGCACTGCACAGG
TGCACTTTGTTCCGGATGCCGGAACTGTGGCTCAGATTGTATACACTGACGACCAAGTCCGTCCACCCCA
GCAGGTGGTGTATACAGCAGATGGTGCCTCCTACACGTCAGTGGACGGTCCAGAGCACACACTGGTCTAC
ATCCACCCGGTGGAAGCTGCACAGACTCTGTTTACAGACCCAGCCCAGGTAGCTTATGTCCAACAGGATG
CCACAGCTCAACAGGTGCTGCCTTCCATTGAGAGTGTGCATGGTTCCGACCCTCTGGCGACTCTGCAGAA
CCCCATTGCCAGACTAGATGCAAAAGAGGAAGAGGAAGAAGAAGAAGATGAGGATGAGGATACAGAGGAA
GAGGAGGAAGAGGATGCTGAAGACACAGATGTTGATGACTGGCAGCCTGACCCGCCCCGGCCTTTTGACC
CCCATGACTTGTGGTGTGAGGAGTGTAACAATGCACATTCTTCCGTGTGCCCGAAGCATGGCCCCTTGCA
TCCCATCCCTAACCGGCCTGTGCTCACCCGGGCAAGAGCGAGCCTGCCTCTGGTCCTCTACATAGATAGG
TTCCTCGGAGGAGTGTTCTCCAAAAGACGGATTCCCAAGCGCACCCAGTTCGGCCCAGTGGAGGGGCCGC
TGGTCAGGGGATCGGAGCTGAAAGATTGCTATATTCATCTCAAGGTTTCTCTTGATAAAGGAGACAGAAA
AGACAGGGATTTGCATGAAGACCTGTGGTTTGAGTTGTCCGATGAGACTCTTTGTAACTGGATGATGTTT
GTGCGCCCAGCCCAGAACCACCTAGAACAGAACCTGGTAGCTTACCAATATGGCCACCATGTGTATTACA
CAACAATAAAGAACGTGGAGCCCAAGCAGGAACTGAAGGTACAGAACTGGATCCACAGCTGCCTGCCAGC
CAGGGTGATGATTAGGGCTCTTTCCTATAAAAGGATCCTTCCCTGA

Translation (341 aa):
MDPKDESAHVWPTSADHEQSTAQVHFVPDAGTVAQIVYTDDQVRPPQQVVYTADGASYTSVDGPEHTLVY
IHPVEAAQTLFTDPAQVAYVQQDATAQQVLPSIESVHGSDPLATLQNPIARLDAKEEEEEEEDEDEDTEE
EEEEDAEDTDVDDWQPDPPRPFDPHDLWCEECNNAHSSVCPKHGPLHPIPNRPVLTRARASLPLVLYIDR
FLGGVFSKRRIPKRTQFGPVEGPLVRGSELKDCYIHLKVSLDKGDRKDRDLHEDLWFELSDETLCNWMMF
VRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVQNWIHSCLPARVMIRALSYKRILP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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