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Report for CCDS57475.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57475.1 Public Mus musculus 7 Sbk3 23 108 98 CCDS HistoryNCBI Gene:381835Re-query CCDS DB by CCDS ID:57475.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57475.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000144863.7 ENSMUSP00000122507.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000144863.7Link to Ensembl Protein Viewer:ENSMUSP00000122507.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000144863Re-query CCDS DB by Protein ID:ENSMUSP00000122507
Original member Current member NCBI NM_001200041.1 NP_001186970.1 Accepted alive Link to Nucleotide Sequence:NM_001200041.1Link to Protein Sequence:NP_001186970.1Re-query CCDS DB by Nucleotide ID:NM_001200041Re-query CCDS DB by Protein ID:NP_001186970Link to BLAST:NP_001186970.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186970.1 342 P0C5K0-2 342 100% 0 0

Chromosomal Locations for CCDS 57475.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 4967340 4968026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4969828 4970030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4970485 4970623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGGCCCTGCAGCGGCTAGTGGAGCTAACAGCCAGCCGAGTGACATCAGTAAGAAGCCTGTGTGTACAGT
ACCGTCTCATCCGAAAGCTAGGTTCCGGCTCCTATGGCCGCGTGCTCCTAGCCCAGCCACGCCAAGGAGG
TCAAACTGTGGCCCTTAAGCTCCTCCGAAGGGACTCAGTCCTGAGAACAACGTTCCTGAGAGAATTCTGT
GTGGGCCGCTGCGTCTCTTCACATCCAGGCCTACTACAGACCCTGGGAAGGCCCCTACAGACACCTCGAT
ATTTTGCCTTTGCTCAGGAGTTTGCACCCTGTGGGGATCTCAGTGGAATGCTCCAGGAGAAGGGCCTCCC
AGAGCTGATGGTGAAGCGGATAGTGGCCCAGCTGGCTGGAGCCCTGGACTTCCTCCATGGCCGGGGGCTA
GTGCATGCAGATGTCAAGCCAGACAATGTGCTAGTCTTCGACCCTGACTGTAACAGAGTAGCCCTGGGTG
ACCTGGGTTTGACTCGACCTGAAGGCAGCCCAACCCCTGCTCCCCCAGTGCCTCTGCCCACTGCACCACC
TGAACTCTGCCTCCTGCTGCCACCAAACACACTGCCCCTGAGGCCAGCTGTGGACTCCTGGGCACTGGGT
GTGCTTCTCTTCTGTGCTGCCACGGCCTGCTTCCCTTGGGATGTAGCATTGGCTCCTGATCCTGAGTTTG
AGGCCTTTGCTGGTTGGATGACCACTAAGCCCCAGCCCCCTCGGCCACCAGCACCCTGGGACCAGTTTGC
ACCCCCAGCTCTGACCTTGCTCCAGGGACTTCTGGACCTGGATCCTGAGACTAGGAGTCCTCCACTAGCT
GTCTTTGATGTTTTAGGGGACAACTGGGGGCTCCAGGGTAGTGGAGAGGGATCCGGAAGCTTGGGGGTTA
TACCCTACAAAGATGGGGAGGAAGAAGAGGGAGGATCAAGTTTGGAGGAGTGGACCGACGAGGAGGAAGA
TGAAATCAAAGACAGTGGGGGGATGGAGGCAGATAACAGAGCTTCATGA

Translation (342 aa):
MALQRLVELTASRVTSVRSLCVQYRLIRKLGSGSYGRVLLAQPRQGGQTVALKLLRRDSVLRTTFLREFC
VGRCVSSHPGLLQTLGRPLQTPRYFAFAQEFAPCGDLSGMLQEKGLPELMVKRIVAQLAGALDFLHGRGL
VHADVKPDNVLVFDPDCNRVALGDLGLTRPEGSPTPAPPVPLPTAPPELCLLLPPNTLPLRPAVDSWALG
VLLFCAATACFPWDVALAPDPEFEAFAGWMTTKPQPPRPPAPWDQFAPPALTLLQGLLDLDPETRSPPLA
VFDVLGDNWGLQGSGEGSGSLGVIPYKDGEEEEGGSSLEEWTDEEEDEIKDSGGMEADNRAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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