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Report for CCDS51443.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51443.1 Public Mus musculus 5 5031410I06Rik 23 108 98 CCDS HistoryNCBI Gene:381622Re-query CCDS DB by CCDS ID:51443.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51443.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063524.2 ENSMUSP00000069697.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063524.2Link to Ensembl Protein Viewer:ENSMUSP00000069697.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000063524Re-query CCDS DB by Protein ID:ENSMUSP00000069697
Original member Current member NCBI NM_207657.3 NP_997540.2 Accepted alive Link to Nucleotide Sequence:NM_207657.3Link to Protein Sequence:NP_997540.2Re-query CCDS DB by Nucleotide ID:NM_207657Re-query CCDS DB by Protein ID:NP_997540Link to BLAST:NP_997540.2

Chromosomal Locations for CCDS 51443.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 26100788 26100964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 26101709 26101892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 26102528 26102671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 26104004 26104163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 26105153 26105291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGGCCTTGTTTGCCCGACTCTGCAGACTTTTTCAGAGAGTCAATGTGGATGGGAGAGAGACCAGAGAGG
GGAGGAAGGATGCTGACCTTCCATCTGAGAGGAATGAAGGACGAAGGAGGTGGACTTGGCGAATGTGCAT
GGCTCACAGACAGACAACATCCCCGGTACCTGTCAAAAGCAAAAAGCAGTTTGAGAAGGAAGAGAAGGAG
CTGATCAAAAAGATCCAGCTCACTACCGAGGAGACAAATGAGCTGAGAGATCGCCTGATCTACGTGACCG
AGGGATCCATGAACAAGAGGCCCTACCACAGGCAAACTCGACATTATAAAGAACTGAAATTAAAGGAGAA
GGAGATCATGACATTTCTACACGACTTAGAGATGAAGAACATGGAGGCCCGAGAGAACAATCAGGAGCTC
AAGAAGGAGAAAAATTTCTATCGTAACCTGCACACCCGGATCCTGCTGGGGGAGAATCTTATAAAGAAGA
AGTTGGCGATATTGCAGCAGGAGAGCAAGGAAATACATGCTGATTGGGCCATCATTCAACAACGTTTGGT
GGAGTTGAACCTGAGTGGTAAAGACGAACAGGAGAAGACCAGCAACCTGGAAGCTCAAGAAAATCAGGTC
TCAGAAGCTGCAAGAGAGCTGGGATTGGCCACAGCTGAAGAAGACAGCATCTTGCAGAATGAGTTGCCAT
GCCAGGAGGCTCCTGCTGAGCACCATCCCCAGCACCCATCATCTTCCTCGGATGAATCTTCCTCAGATGA
ATCTTCTTATAGCACATGTCCTGAGTGGGAATAG

Translation (267 aa):
MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKE
LIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQEL
KKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQV
SEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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