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Report for CCDS17420.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17420.1 Public Mus musculus 3 Rxfp1 23 108 98 CCDS HistoryNCBI Gene:381489Re-query CCDS DB by CCDS ID:17420.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17420.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078527.12 ENSMUSP00000077611.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078527.12Link to Ensembl Protein Viewer:ENSMUSP00000077611.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000078527Re-query CCDS DB by Protein ID:ENSMUSP00000077611
Original member NCBI NM_212452.2 NP_997617.1 Updated not alive Link to Nucleotide Sequence:NM_212452.2Link to Protein Sequence:NP_997617.1Re-query CCDS DB by Nucleotide ID:NM_212452Re-query CCDS DB by Protein ID:NP_997617
Current member NCBI NM_212452.3 NP_997617.1 Accepted alive Link to Nucleotide Sequence:NM_212452.3Link to Protein Sequence:NP_997617.1Re-query CCDS DB by Nucleotide ID:NM_212452Re-query CCDS DB by Protein ID:NP_997617Link to BLAST:NP_997617.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997617.1 758 Q6R6I7 758 100% 0 0

Chromosomal Locations for CCDS 17420.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 79644716 79645017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79648073 79648291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79650414 79650824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79652168 79652397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79656243 79656314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79657412 79657483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79660071 79660142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79661268 79661339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79663297 79663368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79666429 79666503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79667623 79667694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79667782 79667853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79670847 79670918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79678676 79678747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79682441 79682546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79686800 79686898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79705575 79705712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79737746 79737794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2277 nt):
ATGACATCTGGTCCATTCTTCTTCTGCATCTTCATTATTGGAAAATATTTCACTCTCGGAAGTGCACAGG
ATGTCAGTTGTCCCCTCGGCTCCTTCCCCTGTGGGAACATGAGCAGGTGCCTGCCTCAGCTGCTTCACTG
CAATGGTGTGGACGACTGCGGGAACCGAGCTGATGAGGACCACTGCGGAGACAACAATGGGTGGTCTCTG
CAACTGGACAAATATTTTGCTAATTACTATAAACTGGCTTCCACTAACTCCTTTGAGGCAGAAACTTCCG
AATGCTTGGTTGGCTCTGTGCCCATGCATTGTTTGTGCCGAGATCTAGAACTTGACTGTGATGAAGCCAA
TTTACGAGCTGTCCCATCAGTTTCTTCCAATGTGACTGTAATGTCCCTGCAGAGGAACTTCATAAGAACA
CTCCCTCCCAACGGCTTCAGGAAGTACCATGAGCTGCAGAAGCTGTGCCTGCAAAACAATAGGATTCACT
CCGTGAGCGTCTCTGCCTTCAGAGGACTGCGCAGCCTCACTAAACTGTACCTCAGTCATAACAGAATAAC
CTTCCTAAAGCCAGGAGTTTTTGAAGATCTCCACAGACTGGAATGGCTGATAATTGAAGACAATCACCTC
AGTCGAATTTCCCCACTCACATTTTACGGACTAAATTCTCTTATTCTCTTAGTGCTGATGAATAATGCCC
TCACCCGTTTGCCTGACAAACCCCTCTGTCAGCACATGCCCCGCCTGCACTGGCTGGACTTTGAAGGCAA
CCGTATCCATAATTTAAGAAATTTGACTTTTATTTCCTGCAATAATTTAACTGTTTTGGTAATGAGGAAG
AACAAAATCAATTACTTAAATGAACATGCATTTACACACCTCCAGAAACTAGATGAATTGGATTTAGGAA
GTAATAAGATTGAAAATCTTCCACCGAACATATTTAAGGATCTGAAGGAGCTGTCGCAATTGAATATTTC
TTATAACCCAATCCAGAAAATTGAAGTAAATCAATTCGATTGTCTTGCCAAACTCAAGTCTCTCAGCCTT
GAAGGAATAGAAATTTCAAATATCCAACAAAGGATGTTTAGACCGCTCATAAATCTCTCTCACATCTATT
TTAAGAAATTTCAGTACTGTGGATACGCACCACATGTGCGCAGCTGTAAGCCCAACACGGATGGGATTTC
ATCTCTAGAGAACCTCTTGGCAAGCATCATCCAGAGAGTCTTTGTCTGGGTTGTATCTGCCATTACCTGC
TTTGGAAACATTTTTGTTATTTGTATGCGACCATACATCAGATCTGAGAACAAGCTGCATGCCATGTCGA
TCATTTCTCTCTGCTGTGCTGACTGCCTAATGGGGGTGTATCTATTTGTGATTGGTGCCTTTGACCTCAA
GTTTCGGGGAGAGTACAATAAGCACGCACAGCCGTGGATGGAGAGTGTTCATTGTCAGTTCATGGGGTCG
TTGGCCATTCTGTCCACAGAAGTATCCGTTTTACTTTTAACATTTCTGACATTGGAAAAGTACATCTGCA
TTGTGTATCCTTTTCGGTGTTTAAGGCCTCGAAAATGCAGAACAATCACGGTTCTGATTTTCATTTGGAT
TATTGGGTTTATAGTGGCTTTTGCTCCACTTGGCAATAAGGAATTTTTCAAAAACTACTATGGCACCAAT
GGAGTATGCTTTCCTCTTCATTCAGAAGACACGGGAAGTACTGGAGCCCAGATTTATTCAGTGGTAATTT
TTCTTGGTATTAACCTGGTGGCATTTATCATCATTGTGTTCTCCTATGGAAGCATGTTTTACAGTGTTCA
TCAAAGCTCCGTAACAGTAACCGAAATACAGAAGCAAGTGAAGAAGGAGGTGGTTCTCGCCAAACGCTTT
TTCTTTATCGTTTTCACCGACGCGCTGTGCTGGATTCCCATCTTCATACTGAAATTTCTTTCACTGCTTC
AGGTGGAAATACCAGATTCTATTACCTCTTGGGTGGTGATTTTTATTCTGCCTATCAACAGTGCTTTGAA
CCCAATTATCTACACGTTGACCACTAGACCTTTCAAGGAAATGATCCATCAACTCTGGCACAACTACAGA
CAAAGAAGGTCTGTTGACAGGAAAGAGACTCAGAAGGCATATGCTCCATCATTCATCTGGGTGGAAATGT
GGCCCTTGCAGGAGATGTCCTCTGGGTTCATGAAGCCAGGCGCTTTCACAGACCCCTGTGATCTGTCGCT
AGTTTCTCAGTCATCTAGACTCAATTCTTATTCGTAA

Translation (758 aa):
MTSGPFFFCIFIIGKYFTLGSAQDVSCPLGSFPCGNMSRCLPQLLHCNGVDDCGNRADEDHCGDNNGWSL
QLDKYFANYYKLASTNSFEAETSECLVGSVPMHCLCRDLELDCDEANLRAVPSVSSNVTVMSLQRNFIRT
LPPNGFRKYHELQKLCLQNNRIHSVSVSAFRGLRSLTKLYLSHNRITFLKPGVFEDLHRLEWLIIEDNHL
SRISPLTFYGLNSLILLVLMNNALTRLPDKPLCQHMPRLHWLDFEGNRIHNLRNLTFISCNNLTVLVMRK
NKINYLNEHAFTHLQKLDELDLGSNKIENLPPNIFKDLKELSQLNISYNPIQKIEVNQFDCLAKLKSLSL
EGIEISNIQQRMFRPLINLSHIYFKKFQYCGYAPHVRSCKPNTDGISSLENLLASIIQRVFVWVVSAITC
FGNIFVICMRPYIRSENKLHAMSIISLCCADCLMGVYLFVIGAFDLKFRGEYNKHAQPWMESVHCQFMGS
LAILSTEVSVLLLTFLTLEKYICIVYPFRCLRPRKCRTITVLIFIWIIGFIVAFAPLGNKEFFKNYYGTN
GVCFPLHSEDTGSTGAQIYSVVIFLGINLVAFIIIVFSYGSMFYSVHQSSVTVTEIQKQVKKEVVLAKRF
FFIVFTDALCWIPIFILKFLSLLQVEIPDSITSWVVIFILPINSALNPIIYTLTTRPFKEMIHQLWHNYR
QRRSVDRKETQKAYAPSFIWVEMWPLQEMSSGFMKPGAFTDPCDLSLVSQSSRLNSYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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