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Report for CCDS50692.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50692.1 Reviewed, update pending Mus musculus 2 Ctxn2 23 108 98 CCDS HistoryNCBI Gene:381418Re-query CCDS DB by CCDS ID:50692.1See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 50692.1
The coding region has been updated to start at a downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 50692.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099452.2 ENSMUSP00000097051.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099452.2Link to Ensembl Protein Viewer:ENSMUSP00000097051.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099452Re-query CCDS DB by Protein ID:ENSMUSP00000097051
Original member NCBI NM_001162934.1 NP_001156406.2 Updated not alive Link to Nucleotide Sequence:NM_001162934.1Link to Protein Sequence:NP_001156406.2Re-query CCDS DB by Nucleotide ID:NM_001162934Re-query CCDS DB by Protein ID:NP_001156406
Current member NCBI NM_001162934.2 NP_001156406.3 Pending alive Link to Nucleotide Sequence:NM_001162934.2Link to Protein Sequence:NP_001156406.3Re-query CCDS DB by Nucleotide ID:NM_001162934Re-query CCDS DB by Protein ID:NP_001156406Link to BLAST:NP_001156406.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156406.3 81 Q3URE8 81 100% 0 0

Chromosomal Locations for CCDS 50692.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 125147455 125147703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (249 nt):
ATGATGAGTAGCACCTACTGTGGCAATTCTTCAGCAAAGATGAGTGTCCACGAAGTCTCTGAATCCTCCC
TGTCTCTGGAGCAAAAGACCGGCTTTGCCTTTGTGGGCATCTTGTGCATTTTCTTGGGACTTCTCATTAT
CAGATGCTTCAAGATTCTGTTAGACCCATATAGTAGCATGCCCTCTTCTACATGGGAAGATGAAGTTGAA
GAGTTTGATAAGGGGACCTTTGAGTATGCACTTGCCTGA

Translation (82 aa):
MMSSTYCGNSSAKMSVHEVSESSLSLEQKTGFAFVGILCIFLGLLIIRCFKILLDPYSSMPSSTWEDEVE
EFDKGTFEYALA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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