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Report for CCDS15107.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15107.1 Public Mus musculus 1 Sp140l1 23 108 98 CCDS HistoryNCBI Gene:381287Re-query CCDS DB by CCDS ID:15107.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15107.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160792.7 ENSMUSP00000125122.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160792.7Link to Ensembl Protein Viewer:ENSMUSP00000125122.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160792Re-query CCDS DB by Protein ID:ENSMUSP00000125122
Original member Current member NCBI NM_213615.2 NP_998780.2 Accepted alive Link to Nucleotide Sequence:NM_213615.2Link to Protein Sequence:NP_998780.2Re-query CCDS DB by Nucleotide ID:NM_213615Re-query CCDS DB by Protein ID:NP_998780Link to BLAST:NP_998780.2

Chromosomal Locations for CCDS 15107.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 85088778 85088816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85089527 85089580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85091077 85091189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85094297 85094359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85099477 85099648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85100532 85100694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85109337 85109368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGGCAGGAGGCGACAATGAACTCAGCAGCAGGACAATCCCAGAGGACCAGAATGAAGAGGAGTCAGATG
ACTATCAGCTCATGTTCAAGCACTTCAAAGAAAACAAGGTGGAGATCGCAAGTGCCATCACCAAGCCGTT
TCCTTTCCTCATGAGCCTTCGAGACCGAGACTTCATCTCGGAGCAGAAGTTTCAGGAATATCAAGAAACA
TGTAAGAACCTGGCCCCAGTGGAGAGAGTCGTGTACGACATCCTCAGCAATGTACAGAAGAAGTTTAGCC
GGGATCTTCTGAAAGTGATATTCAGCAAAACACATCTGAAGGTCTACCCCGACTTAAAGGAGACTCTAAA
ACACTTCTTCCTAAATGCATCCAAAACTAATGATGAACAAGCAGAGGAGATGCTTAGCCTCCCACAATGC
AATGGAGGAGTTTTGGCCCAGGAGCACAGCAACCCACACGTGAAAAGAAGTGTTCCTGTGTCATGTGTTC
CCCAACATATGTGCCAGAAGACCTGGAAGCAAGGATGGGAAGCAGCCAAGGAGAAGGTGTGGGCACCAGG
AGGAACATTCCTGCAAGAAAACCCAAGAAGCAGAGAATCCTGGCAGGTCTGGAGTCTGCATTGTAGACCA
TGGTAG

Translation (211 aa):
MAGGDNELSSRTIPEDQNEEESDDYQLMFKHFKENKVEIASAITKPFPFLMSLRDRDFISEQKFQEYQET
CKNLAPVERVVYDILSNVQKKFSRDLLKVIFSKTHLKVYPDLKETLKHFFLNASKTNDEQAEEMLSLPQC
NGGVLAQEHSNPHVKRSVPVSCVPQHMCQKTWKQGWEAAKEKVWAPGGTFLQENPRSRESWQVWSLHCRP
W


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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