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Report for CCDS15032.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15032.1 Public Mus musculus 1 Mreg 23 108 98 CCDS HistoryNCBI Gene:381269Re-query CCDS DB by CCDS ID:15032.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15032.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048860.8 ENSMUSP00000041878.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048860.8Link to Ensembl Protein Viewer:ENSMUSP00000041878.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000048860Re-query CCDS DB by Protein ID:ENSMUSP00000041878
Original member NCBI NM_001005423.2 NP_001005423.1 Updated not alive Link to Nucleotide Sequence:NM_001005423.2Link to Protein Sequence:NP_001005423.1Re-query CCDS DB by Nucleotide ID:NM_001005423Re-query CCDS DB by Protein ID:NP_001005423
Current member NCBI NM_001005423.3 NP_001005423.1 Accepted alive Link to Nucleotide Sequence:NM_001005423.3Link to Protein Sequence:NP_001005423.1Re-query CCDS DB by Nucleotide ID:NM_001005423Re-query CCDS DB by Protein ID:NP_001005423Link to BLAST:NP_001005423.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005423.1 214 Q6NVG5 214 100% 0 0

Chromosomal Locations for CCDS 15032.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 72160885 72161019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72162322 72162485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72164072 72164162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72192043 72192202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72212017 72212111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (645 nt):
ATGGGGCTGCGCCGCTGGCTACGGAGCGCCTGCTGCTGCTGCCCGTGCCGGTGCCTGGAGGAGCCCGCGC
GG
CCCGAGAAGGAGCCGCTGGTCAGTGGTAACAATCCGTATTCCTCCTTTGGAGCGACTCTGGAGAGGGA
T
GATGAGAAGAATTTATGGAGCATGCCTCATGACGTGTCCCACACAGAGGCGGATGACGATAGGATCTTG
TAT
AATTTGATAGTCATTCGTAATCAGCAGACCAAAGACTCAGAGGAATGGCAAAGACTCAACTATGATA
TC
TACACCCTGCGGCAGATCCGCAGGGAAGTGAGGAACCGATGGAGACGAATCTTAGAGGACTTGGGCTT
T
CAAAGGGAAGCCGACTCTCTGTTGTCAGTGACCAAACTCAGCACCATGAGTGATTCTAAAAACACAAGG
AAA
GCCCGGGAGATGCTGTTAAAGCTGGCTGAAGAGACCTCTATCTTCCCCGCCAGCTGGGAGCTCTCCG
AG
AGGTACCTCTTGGTTGTGGACCGGCTCATTGCTCTCGATGCTGCTGAGGACTTCTTTAAGATTGCTAG
C
CAAATGTACCCCAAGAAACCTGGGGTCCCATGCCTGGTGGACGGCCAGAGAAAACTGCACTGCCTTCCA
TTT
CCAAGCCCCTGA


Translation (214 aa):
MGLRRWLRSACCCCPCRCLEEPARPEKEPLVSGNNPYSSFGATLERDDEKNLWSMPHDVSHTEADDDRIL
Y
NLIVIRNQQTKDSE
EWQRLNYDIYTLRQIRREVRNRWRRILEDLGFQREADSLLSVTKLSTMSDSKNTR
K
AREMLLKLAEETSIFPASWELSERYLLVV
DRLIALDAAEDFFKIASQMYPKKPGVPCLVDGQRKLHCLP
F
PSP




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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