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Report for CCDS14824.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14824.1 Public Mus musculus 1 Xkr9 23 108 98 CCDS HistoryNCBI Gene:381246Re-query CCDS DB by CCDS ID:14824.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 14824.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088542.3 ENSMUSP00000085900.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088542.3Link to Ensembl Protein Viewer:ENSMUSP00000085900.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000088542Re-query CCDS DB by Protein ID:ENSMUSP00000085900
Original member Current member NCBI NM_001011873.2 NP_001011873.1 Accepted alive Link to Nucleotide Sequence:NM_001011873.2Link to Protein Sequence:NP_001011873.1Re-query CCDS DB by Nucleotide ID:NM_001011873Re-query CCDS DB by Protein ID:NP_001011873Link to BLAST:NP_001011873.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001011873.1 373 Q5GH62 373 100% 0 0

Chromosomal Locations for CCDS 14824.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 13672493 13672764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13684056 13684276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13700755 13701383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGAAATATACCAAGTGTAATTTTATGATGTCCGTTTTGGGCATTATAATCTATGTAACTGATTTAGTTG
CAGACATTGTCCTATCTGTTAGGTACTTCCATGATGGACAATATGTTCTTGGTGTTTTAACCTTGAGCTT
TGTGCTTTGTGGAACACTCATAGTCCATTGTTTTAGCTACTCATGGTTGAAGGCTGACTTAGAGAAAGCA
GGACAAGAAAATGAACGTTATTTTCTTCTACTTCATTGCTTGCAAGGAGGAGTTTTCACAAGGTATTGGT
TTGCCTTGAGAACGGGTTACCATGTGGTTTTCAAACACAGCGACAGGAAGAGTAATTTTATGGAGGAGCA
AACGGATCCTCACAAAGAAGCAATAGACATGGCCACCGACTTGAGCATGCTCAGGCTGTTTGAGACCTAC
CTGGAAGGCTGCCCGCAACTCATTCTCCAGCTCTATGCCTTTCTGGAGTGTGGCCAGGCAAATTTAAGTC
AGTGCATGGTCATCATGGTTTCCTGCTGTGCTATTTCTTGGTCAACTGTTGACTATCAAATAGCTTTAAG
AAAATCATTGCCCGATAAAAATCTTCTCCGAGGACTCTGGCCCAAACTCATGTATCTCTTTTACAAGTTG
CTTACCTTGTTATCCTGGATGCTGAGTGTTGTACTTCTGCTGTTCGTAGATGTGAGGGTTGCTTTGCTTC
TGCTATTATTTCTTTGGATCACAGGCTTCATATGGGCATTTATAAACCATACTCAGTTTTGTAATTCTGT
AAGTATGGAGTTCTTATATAGGATTGTGGTTGGATTCATCCTTGTGTTTACATTTTTTAATATCAAGGGG
CAGAATACCAAATGCCCAATGTCTTGTTATTATACTGTAAGAGTGCTAGGCACCCTGGGAATCTTGACTG
TATTCTGGATCTACCCTCTTTCTATCTTTAACTCTGACTATTTTATCCCTATTAGTGCCACCATAGTTCT
TGCTCTTCTCCTTGGGATTATTTTTCTTGGTGTTTATTATGGAAATTTTCACCCAAATAGAAATGTAGAA
CCACAACTTGATGAAACTGATGGAAAAGCACCTCAGAGAGATTGTAGAATAAGATATTTTCTAATGGACT
AA

Translation (373 aa):
MKYTKCNFMMSVLGIIIYVTDLVADIVLSVRYFHDGQYVLGVLTLSFVLCGTLIVHCFSYSWLKADLEKA
GQENERYFLLLHCLQGGVFTRYWFALRTGYHVVFKHSDRKSNFMEEQTDPHKEAIDMATDLSMLRLFETY
LEGCPQLILQLYAFLECGQANLSQCMVIMVSCCAISWSTVDYQIALRKSLPDKNLLRGLWPKLMYLFYKL
LTLLSWMLSVVLLLFVDVRVALLLLLFLWITGFIWAFINHTQFCNSVSMEFLYRIVVGFILVFTFFNIKG
QNTKCPMSCYYTVRVLGTLGILTVFWIYPLSIFNSDYFIPISATIVLALLLGIIFLGVYYGNFHPNRNVE
PQLDETDGKAPQRDCRIRYFLMD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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