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Report for CCDS29470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29470.1 Public Mus musculus 19 Ap5b1 23 108 98 CCDS HistoryNCBI Gene:381201Re-query CCDS DB by CCDS ID:29470.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29470.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096318.3 ENSMUSP00000094042.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096318.3Link to Ensembl Protein Viewer:ENSMUSP00000094042.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000096318Re-query CCDS DB by Protein ID:ENSMUSP00000094042
Original member Current member EBI ENSMUST00000235575.1 ENSMUSP00000157737.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235575.1Link to Ensembl Protein Viewer:ENSMUSP00000157737.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235575Re-query CCDS DB by Protein ID:ENSMUSP00000157737
Original member Current member NCBI NM_001033448.3 NP_001028620.1 Accepted alive Link to Nucleotide Sequence:NM_001033448.3Link to Protein Sequence:NP_001028620.1Re-query CCDS DB by Nucleotide ID:NM_001033448Re-query CCDS DB by Protein ID:NP_001028620Link to BLAST:NP_001028620.1
Original member Current member NCBI NM_001362046.1 NP_001348975.1 Accepted alive Link to Nucleotide Sequence:NM_001362046.1Link to Protein Sequence:NP_001348975.1Re-query CCDS DB by Nucleotide ID:NM_001362046Re-query CCDS DB by Protein ID:NP_001348975Link to BLAST:NP_001348975.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028620.1 876 Q3TAP4 876 100% 0 0
NP_001348975.1 876 Q3TAP4 876 100% 0 0

Chromosomal Locations for CCDS 29470.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5568458 5568607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5568704 5571184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2631 nt):
ATGGGGCCCCTAGGTCGAGAAGCCTGGGCCCAGCGCCTGGGGGCCTTCCGAGCCAGCCCATCCGCCTTTC
TGGCAGGTGCCGAAGGTGAGGATTTGGGTCGCGACCTGTTGAGTGACCTAAGGAGTGAAAAGCTAAGCGA
GCAGACCAAGGTTTCCTTACTGACACTGAGCTTGGAGTACTCTGATAAACTTTGGCCTGATGCACCTGCC
GCGGAGGCTGCTGCCACTTCCCTGTTGGACACGCTTGTCCTCCTGCCCACAAGACCTTCAGCTCTCCGGA
GGCTCCTGTTGTTGGCAGCCACTACAGCCCTGGTGTCAGGAGATGCTCTCGGACCCACTTCGGGAGCTTC
CTGCCGGCTTCTGCCCTTACTTCTTGGCTTAGCTTCAGGCCGAGACTTGGGACGAAGCTTTGGAACCCCT
TCAGAACAGCGCCATCTACAGGCCACAGCCTGTGAATGCCTTGGAGAACTTGAGCGCTGTAAGCCTGGGC
TGCTGGCCGGCGCCCTGGGGATGCTGCGGAGCCTCCCAGGGCAAACAGGTCCCATCCAGCCTGTCAGCCT
GCTTCTGGCCCTTGTTCTACACGACACCTTGGTGGTACAGTCCAGGTCTGGGGCTGGCCTGCAAGGCCTG
CTGGTGGCTGAGGACTTCTCCACTGGGAGTTGTCCCTGGGACTGGACCCTGGCTGAGGAATGGGATGCCC
ATCTTAAGCCCCAGGGGCCCAGCTGGCCCACAGCTGGGGAGGAGGAGCGTGGCTTTCCGGTTCTAGAGCC
CAGCCCCGAGGACGCCCGAGAGCTGAAGGCTGCCGTGGCCCAGCTTCTGGACACTTCCTATCTGCTCACT
CCTGTGGCTCAGGCTCAACTTCTGTGGCTGTTGGGCTGGGCCCTCCGGGGTCTTCGGGGACAGCCACCAG
TGCTTTTCAAGCCACAGCTGGTTCGGCTGCTGGGCACGGCACAGCTGACACTGTTACACTCAGTTCTGTC
TCTGAAGGCGGCCTTTGGCGAGGCCCTGTTCACTGCACAGGATGAAGCTCTGCTCCTCCGCAGGCTCACC
TTGGGAGCCCAGCACCCAGCTTTACCCTCGCCCACACACCTCTTTTACCTGCATTGCATCCTGAGCTTCC
CCGAGAATTGCCCACTAGGTCCAGAGGGGGAAGAGGCTGCCCCGCTGCTGTTGGGGCCCCAGCTGTGCCG
GGGCCTCATGCCCAGTCTCCTTCATGACCCAACGGTTCTCCTGGCCCGCCTGCATTTGCTGTGTCTGCTC
TGTGCTGACGATGAGGAAGAGGAGAAAGACCAGACTCAGGGCCCACAGTGGTTCCTACAGGAGGTGCTGG
CTGGGCTACAGCAAAGGGCAGCCCTGGATGGTGGTCCCCGGGCCTTGGCCACTCTCTGTTTCCAAGCCTC
ATACCTTGTTACTAACTGCCTGACTAGACACTCCACAGTACAGACATTTTTGATCCGCGGACTGGCCCAA
CTGTACCGAGCTCGGCCTTCCCTGGCACCCCACTTTGTGGACCTCTTAGATCAGGTAAGCCCTGAGCTGA
GAGAGCCCCTCAGGGAGGTGCTGCTCCAAGAGGCGGTGGCCAGGCCAGGCGAGAGCGAAGCCCTTTGCTG
GCACCTGCAGATGCTGGCAAAGGTGGCAGAGGGGGCCACTCAGAGTACCACACTCAGCTTTCTACAGGCT
GCAGCTGTGCACTGCACCGACTGGGGCCTCCACCAGGCCCTACTGCGGGTGTGCCGTGCTCTGCTGCGGA
CAGGCGGGGGAGATGGTCTGGCCAACTTGCTGCAGGAACTGGCCAGACAGCTAGAGAATGCTGACGGACG
GGACCATGCCCGACTATACTATGTCCTCTTGTCCCATCTGTCAAGTTCCAAGTTGGGGATGGCGCTGGGC
CCCTCACTGGCTGCACCTGCACTGGCCTCGTCACTAATGGCGGAGAACCAGGGCTTCTCATCAGCACTGA
TGGTGCAGGAGACCTCAGCCCCAATTCAGTTGAGTGTGGGGCCTCAGCAGGCCAAAGGCCCGCTCCCGGT
GCTGTGTCTGCAGGTGCAGGCACTGGATGCTCCCGTCTACTCGCTGGAGCTGCGCTTCCGTGTGGAAGGA
CAGCTCTATGAGCCGTTGGAGGCTGTCCACATACCCTGCTTGCGTCCGGGACAACCTGCGCATCCTCTGT
ACCTGCTTCTGCAGCCCCGATGCCCAGCCCCTGCCCGCCTACACGTCCGGGCCCTTTACAGCACATCCGC
TGGCCTCACGTGCCATGCCCGCCTGCCACCCCTGTCTGTGAACTTTGCTGACCTCTTCCTGCCTTTCCCC
CGGCTCCCTAAGGGCTCTGAGTTGCGTTTCTTCGATGAGCTCTGGAACTCCTGCCTACCAAAGGGCGTAG
AGAGCCGTGTGTGGTGTCCACTTGGGCAGCAGGGCCTGGAGGCCTTGGTGTCCCAGTACCTAGAGCCCTT
TGTAGTGCTGGCTCAGCCCCCTACCACCTACCTCATAGCCATCCGCCTGCCTCCTGCCTCCATGCTGCTG
CTGCGCCTGGAGAAAGCTCAGGTGGATGGTGTGCCTGTAGCCCTAAGGACTGATGACTGGGCTGTGCTGC
CCCTGGTAGGGGACTACCTCCGCGGGCTTGCAGCCCACTGA

Translation (876 aa):
MGPLGREAWAQRLGAFRASPSAFLAGAEGEDLGRDLLSDLRSEKLSEQTKVSLLTLSLEYSDKLWPDAPA
AEAAATSLLDTLVLLPTRPSALRRLLLLAATTALVSGDALGPTSGASCRLLPLLLGLASGRDLGRSFGTP
SEQRHLQATACECLGELERCKPGLLAGALGMLRSLPGQTGPIQPVSLLLALVLHDTLVVQSRSGAGLQGL
LVAEDFSTGSCPWDWTLAEEWDAHLKPQGPSWPTAGEEERGFPVLEPSPEDARELKAAVAQLLDTSYLLT
PVAQAQLLWLLGWALRGLRGQPPVLFKPQLVRLLGTAQLTLLHSVLSLKAAFGEALFTAQDEALLLRRLT
LGAQHPALPSPTHLFYLHCILSFPENCPLGPEGEEAAPLLLGPQLCRGLMPSLLHDPTVLLARLHLLCLL
CADDEEEEKDQTQGPQWFLQEVLAGLQQRAALDGGPRALATLCFQASYLVTNCLTRHSTVQTFLIRGLAQ
LYRARPSLAPHFVDLLDQVSPELREPLREVLLQEAVARPGESEALCWHLQMLAKVAEGATQSTTLSFLQA
AAVHCTDWGLHQALLRVCRALLRTGGGDGLANLLQELARQLENADGRDHARLYYVLLSHLSSSKLGMALG
PSLAAPALASSLMAENQGFSSALMVQETSAPIQLSVGPQQAKGPLPVLCLQVQALDAPVYSLELRFRVEG
QLYEPLEAVHIPCLRPGQPAHPLYLLLQPRCPAPARLHVRALYSTSAGLTCHARLPPLSVNFADLFLPFP
RLPKGSELRFFDELWNSCLPKGVESRVWCPLGQQGLEALVSQYLEPFVVLAQPPTTYLIAIRLPPASMLL
LRLEKAQVDGVPVALRTDDWAVLPLVGDYLRGLAAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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