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Report for CCDS29237.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29237.1 Public Mus musculus 18 Arl14epl 23 108 98 CCDS HistoryNCBI Gene:381142Re-query CCDS DB by CCDS ID:29237.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29237.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097580.1 ENSMUSP00000095187.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097580.1Link to Ensembl Protein Viewer:ENSMUSP00000095187.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000097580Re-query CCDS DB by Protein ID:ENSMUSP00000095187
Original member Current member EBI ENSMUST00000234910.1 ENSMUSP00000157009.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234910.1Link to Ensembl Protein Viewer:ENSMUSP00000157009.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234910Re-query CCDS DB by Protein ID:ENSMUSP00000157009
Original member Current member NCBI NM_001033446.2 NP_001028618.1 Accepted alive Link to Nucleotide Sequence:NM_001033446.2Link to Protein Sequence:NP_001028618.1Re-query CCDS DB by Nucleotide ID:NM_001033446Re-query CCDS DB by Protein ID:NP_001028618Link to BLAST:NP_001028618.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028618.1 152 Q3UKZ7 152 100% 0 0

Chromosomal Locations for CCDS 29237.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 46926320 46926415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46928519 46928658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46932406 46932628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (459 nt):
ATGACTGAACCATCACAGAAGAACAACTCCACTCAACAGGAGCTCACTAACCACTTGTTTCCAGAGAAAA
GCAGTCAGATTGGACAGAAGCAACTGCAACAGATAGAACGGCAGCTAAAGTGCTTGGCATTTCAAAACCC
TGGACCTCAGGTGGCAGATTTTAACCCCGAGACAAGGCAGCAGAAAAAGAAAGCGCGGATGTCAAAGATG
AATGAGTACTTTTCTGTGAAGTACAAGGTGATGAAGAAGTACGACAAAAGCGGCAGGCTGATCTGTAACG
ACGTGGACCTGTGTGACTGCCTGGAGAAGAACTGCCTGGGATGCTTCTACCCGTGCCCCAAGTGCAACTC
CAACAAGTGTGGGCCGGAGTGCCGCTGCAACCGCCGCTGGGTCTATGATGCCATCGTCACCGAGTCTGGC
GAGGTCATCAACACCCTGCCATTTAGTGTTCCTGACTAG

Translation (152 aa):
MTEPSQKNNSTQQELTNHLFPEKSSQIGQKQLQQIERQLKCLAFQNPGPQVADFNPETRQQKKKARMSKM
NEYFSVKYKVMKKYDKSGRLICNDVDLCDCLEKNCLGCFYPCPKCNSNKCGPECRCNRRWVYDAIVTESG
EVINTLPFSVPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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