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Report for CCDS26716.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26716.1 Public Mus musculus 13 Tmem171 23 108 98 CCDS HistoryNCBI Gene:380863Re-query CCDS DB by CCDS ID:26716.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26716.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064347.7 ENSMUSP00000070369.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064347.7Link to Ensembl Protein Viewer:ENSMUSP00000070369.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000064347Re-query CCDS DB by Protein ID:ENSMUSP00000070369
Original member Current member NCBI NM_001025606.1 NP_001020777.1 Accepted alive Link to Nucleotide Sequence:NM_001025606.1Link to Protein Sequence:NP_001020777.1Re-query CCDS DB by Nucleotide ID:NM_001025606Re-query CCDS DB by Protein ID:NP_001020777Link to BLAST:NP_001020777.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020777.1 322 Q4KL18 322 100% 0 0

Chromosomal Locations for CCDS 26716.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 98686321 98686516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98688348 98688483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98692004 98692640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGTCTTCTGTAGGAACTGCTGAGCCAGATGGAGACCAGAGGGACCGGCATGTCAGCAAGCTCATTTTCT
TCCTCTTTGTCTTCGGTGCAGCTCTGTTGTGTGTTGGGGTCCTGCTCTCCATCTTTGGGTACCAGGCATG
CCAATATAAGCCCCTCTCACACTGCAGCATAGTGCTGAAGATTGCTGGGCCTTCGTGTGCAGTGGTGGGC
CTTGGGGCTGTGATTCTGGCCCGGTCCCGGGCACGCCTGCATCTACGGGAGCGACAGCGGCAAGGCCTTC
AGGACCCTGACCAATCCTTCTTCTGTGGAGAGAGCCGCCAGTTTGCCCAGTGTCTCATCTTTGGGTTCTT
GTTTCTGACCAGTGGCATGCTCATTAGCATACTGGGCATTTGGGTGCCAGGATGTGACTCAGATTGGGCA
CAGGAACCACTGAATGAGACAAACACCGGAGAAGGAGAACCCCAGATCTGTGGCTTCCTTTCTCTGCAGA
TCATGGGGCCCTTGGTTGTGCTTGTGGGACTGTGTTTCTTTGTGGTGGCCCATGTTAAGAAGAAAAACAA
CTTGAGTTCAAGCCGAGATACCTCTGAGGTCGAAGGTGGACACGCCCACAGCACGGAGCCTGTCCACATC
ACTGTAGGTGACTCAGTGATAATCTTCCCGCCCCCTCCACCACCTTACTTTCCTGAGTCTTCAGCAGCGG
CTCCATCCCCTGGGGCTAACAGCCTGCACCAGATTGAAAACCCACCTTCCTATTCCAGCCTTTTTAACTA
CGGGACCCCAACTCCTGAGAACCAGGGAGCAGCCTCTGAGAGAGAACAGGAGCTCATATACACCATTTCT
GGGCAGGGTTCATCCTCGGAGAGATCATACACTGGACATCTTCCTCTGGACCTGCCCCCTAGATATGAAG
AAAAAGAAACTGCCCCAGCCACACCCTTGGGTGCCCCTTCTGATGCATCCCCGCCATGA

Translation (322 aa):
MSSVGTAEPDGDQRDRHVSKLIFFLFVFGAALLCVGVLLSIFGYQACQYKPLSHCSIVLKIAGPSCAVVG
LGAVILARSRARLHLRERQRQGLQDPDQSFFCGESRQFAQCLIFGFLFLTSGMLISILGIWVPGCDSDWA
QEPLNETNTGEGEPQICGFLSLQIMGPLVVLVGLCFFVVAHVKKKNNLSSSRDTSEVEGGHAHSTEPVHI
TVGDSVIIFPPPPPPYFPESSAAAPSPGANSLHQIENPPSYSSLFNYGTPTPENQGAASEREQELIYTIS
GQGSSSERSYTGHLPLDLPPRYEEKETAPATPLGAPSDASPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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