NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50713.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50713.2 Public Mus musculus 2 Fastkd5 23 108 98 CCDS HistoryNCBI Gene:380601Re-query CCDS DB by CCDS ID:50713.2See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 50713.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110262.2 ENSMUSP00000105891.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110262.2Link to Ensembl Protein Viewer:ENSMUSP00000105891.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110262Re-query CCDS DB by Protein ID:ENSMUSP00000105891
Original member Current member NCBI NM_001146084.2 NP_001139556.2 Accepted alive Link to Nucleotide Sequence:NM_001146084.2Link to Protein Sequence:NP_001139556.2Re-query CCDS DB by Nucleotide ID:NM_001146084Re-query CCDS DB by Protein ID:NP_001139556Link to BLAST:NP_001139556.2
Original member Current member NCBI NM_198176.3 NP_937819.3 Accepted alive Link to Nucleotide Sequence:NM_198176.3Link to Protein Sequence:NP_937819.3Re-query CCDS DB by Nucleotide ID:NM_198176Re-query CCDS DB by Protein ID:NP_937819Link to BLAST:NP_937819.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139556.2 762 Q7TMV3 762 100% 0 0
NP_937819.3 762 Q7TMV3 762 100% 0 0

Chromosomal Locations for CCDS 50713.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 130614245 130616533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2289 nt):
ATGTCAGCCGCTCTCAAGCTATTAGAACCTTTAAAGTACAAAGCACCTTGTAATCCTGCTTACCGTGCAG
CCCAAAGCGTGGCCCATTGGCACATGGGAAACATCACGCCACACGGGGGACAGACGCTCCCTGAATGTAA
TAGCTCCTGCCATCTTGCCAGAAAAGTGAAGAACGTTGGTGGTACCACCCTTCCTCGGAGAACCTTCACA
GCCAGCAGTGCCCACCTGGGTTTGGAGTTCAACAAAGCTTCTACCCTTAATGCCAGCACACTGCATCCAG
ACTCATCCAGTGCTGGAGGAGGTGAAGAGGATGTAGAGGTCTTTGATTCCTTCGAAGGAACCCGAGTTTT
CTTAAAGCTAAGGCCAGAGTACCAGCTTCACAGCTATAACAGAAGTGACACTCACCAACCCATAGCTGCT
TCAGAAGTTGAACTAATTTTGCACAAAGTCACATTCTACCAAAATAAACTCCAGCCAGAAGTCATAACTA
ATTATTTTTATAAGCTCAGCTCTTTGCCAGCAGAACAGAATTCTGTTTTGCTATCCAGTAACAGCTTTGC
TTTGCTCTGCCAGCTGAGTGTGAAAAACATACAGCTCTTTAACACCTCCGATCTGATCAGTATTTTGAAA
GCCTTTGTTGACTTAAGAATTCCCCCCTCCCTGTCCATGCTAGATGTGTATGAAACCAGATTTTGCCATC
AGGTATGGGAGATGACTCTAGATCAGCTTCTCCTAGTAGCTGATCTTTGGCGGAACTTAGGCCGCAGAGT
GCCTCGTTTTTTTAAAATTTTTTTTAGTTATCTTAATTTACACTGGAGAGAGCTATCTTTGTCTCAGCTG
ATTCACTTAATTTATATTATAGGTGAAAATCGTCAAGTACCACAGGACCTGATGCAAAGACTAGAATCAC
TGATCCTTAAGTATGTAGATTCAGTCAATTTAGAGGAAGTTGGTACAATCTGTTTGGGGTTTTTTAAATC
AAGTAGTAGTCTCTCTGAATTTGTCATGCGGAAAATTGGAGATCTAGCTTGTGCTAACATGCAGCATCTG
AGTAGCCACACCTTAGTTCATATTCTTAAAATGTTCCGCTTCACTCATGTAGATCATATACATTTTATGA
AGCAGTTTGGAGAAATTGCTCCTCAGAGAATTCCTTCCTTGGGGGTTCAGGGTGTTATGCACCTCACACT
TGCCTGCTCAGCCTTACGCATCCTGGATGAAAGAGTAATGAACGCAGTAGCTGCCTCTTTGCCTCCGAGG
GTAGCACACTGTCGAAGTAAAGATGTTGCCAAAATTCTGTGGTCCTTTGGAACTCTGAATTATAAGCCAC
CCAACACAGAAGAATTTTATTCCAGTCTCATAAATGAAATCCACAGAAAGATGCCTGAATTCAACCAGTA
CCCAGAGCACCTTCTCACCTGCCTGATTGGCTTGGCATTTTCTGAATACTTTCCAGTTGAGTTCATAAAT
GTTGCTCTGAGCCCAGGATTTGTCAAGTTAGCTCAAGAGAGAAGTAAGTTTGAACTCACTAAGGAACTGT
TTACTCTTGATGGTACAGTTGCCATTGAATGTCCAGATTACAAGGGCAACCGTCTTAATTCTCACCTTCA
ACAAGAAACATCTGCAAATCTGTGGAATCTAGCAAGTAAGGATATGAGATCAAAGCCTGAATTCCTAGAA
ACTCTCTATTTACTTGAGACCATGTTGGGTGGCCCCCAGTACATTAAGCACCATATGATTTTGCCTCATA
CCCGCTCTTCTGACTTAGAGGTTCAGCTTGATGCTAACATGAAACCAATGCCCTTTAATAGTGAAGCGAC
ACCAACTGAAGATGGAGCTCAATTACGGTTTAAGCAAGTGGGAGTCAGCCTTACAGATGATTTGATGAAT
CAGTTGCTGAAGGGAAAAGCCAAGAGGTATTTCCAGGGGCAAATTGAGTTAGAGACTGGCCAGCCACCCA
TGGAGTTAAGAAAGAAGACAACTGTACCCTTGGTGAACTCTGGTTGCAATGGGACAGATAGATTGGGGGA
TGGGATGGTTGGCTTGTGCCCTCTAGCCCACATGCAGCCCCCATTAGTGAAGCTAGCTATCCAGTTCACA
AACAAGAACCAATACTGCTATGGTTCCAGGGCTCTACTTGGATTGCACAATATGAAGAGGAGGCAGCTAG
TTCAAATTGGGTACCGTGTGGTAGAATTACCCCACTGGGAATGGCTTCCACTACTAAAAAGAACTCGCTT
AGAGAAGCTAGCATACCTCCATGAGAAAGTGTTCACCTCTGCTCTCTGA

Translation (762 aa):
MSAALKLLEPLKYKAPCNPAYRAAQSVAHWHMGNITPHGGQTLPECNSSCHLARKVKNVGGTTLPRRTFT
ASSAHLGLEFNKASTLNASTLHPDSSSAGGGEEDVEVFDSFEGTRVFLKLRPEYQLHSYNRSDTHQPIAA
SEVELILHKVTFYQNKLQPEVITNYFYKLSSLPAEQNSVLLSSNSFALLCQLSVKNIQLFNTSDLISILK
AFVDLRIPPSLSMLDVYETRFCHQVWEMTLDQLLLVADLWRNLGRRVPRFFKIFFSYLNLHWRELSLSQL
IHLIYIIGENRQVPQDLMQRLESLILKYVDSVNLEEVGTICLGFFKSSSSLSEFVMRKIGDLACANMQHL
SSHTLVHILKMFRFTHVDHIHFMKQFGEIAPQRIPSLGVQGVMHLTLACSALRILDERVMNAVAASLPPR
VAHCRSKDVAKILWSFGTLNYKPPNTEEFYSSLINEIHRKMPEFNQYPEHLLTCLIGLAFSEYFPVEFIN
VALSPGFVKLAQERSKFELTKELFTLDGTVAIECPDYKGNRLNSHLQQETSANLWNLASKDMRSKPEFLE
TLYLLETMLGGPQYIKHHMILPHTRSSDLEVQLDANMKPMPFNSEATPTEDGAQLRFKQVGVSLTDDLMN
QLLKGKAKRYFQGQIELETGQPPMELRKKTTVPLVNSGCNGTDRLGDGMVGLCPLAHMQPPLVKLAIQFT
NKNQYCYGSRALLGLHNMKRRQLVQIGYRVVELPHWEWLPLLKRTRLEKLAYLHEKVFTSAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH