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Report for CCDS13013.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13013.1 Public Homo sapiens 20 SDCBP2 24 110 108 CCDS HistoryNCBI Gene:27111Re-query CCDS DB by CCDS ID:13013.1Re-query CCDS DB by GeneID:27111See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 13013.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381808.7 ENSP00000371229.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381808.7Link to Ensembl Protein Viewer:ENSP00000371229.3Re-query CCDS DB by Nucleotide ID:ENST00000381808Re-query CCDS DB by Protein ID:ENSP00000371229
Original member Current member NCBI NM_015685.6 NP_056500.2 Accepted alive Link to Nucleotide Sequence:NM_015685.6Link to Protein Sequence:NP_056500.2Re-query CCDS DB by Nucleotide ID:NM_015685Re-query CCDS DB by Protein ID:NP_056500Link to BLAST:NP_056500.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056500.2 207 Q9H190-3 207 100% 0 0

Chromosomal Locations for CCDS 13013.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 1310441 1310495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1310800 1310891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1312337 1312508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1312587 1312762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1313340 1313468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (624 nt):
ATGGTGGCACCGGTAACCGGGTACAGCCTGGGCGTGCGGCGAGCTGAGATCAAGCCCGGGGTGCGCGAGA
TC
CACCTGTGCAAGGACGAGCGCGGCAAGACCGGGCTGAGGCTGCGGAAGGTCGACCAGGGGCTCTTTGT
G
CAGTTGGTCCAGGCCAACACCCCTGCATCCCTTGTGGGGCTGCGCTTTGGGGACCAGCTCCTGCAGATT
GAC
GGGCGTGACTGTGCTGGGTGGAGCTCGCACAAAGCCCATCAGGTGGTGAAGAAGGCATCAGGCGATA
AG
ATTGTCGTGGTGGTTCGGGACAGGCCGTTCCAGCGGACTGTCACCATGCACAAGGACAGCATGGGCCA
C
GTCGGCTTCGTGATCAAGAAGGGGAAGATTGTCTCTCTGGTCAAAGGGAGTTCTGCGGCCCGCAACGGG
CTC
CTCACCAACCACTACGTGTGTGAGGTGGACGGGCAGAATGTTATCGGGCTGAAGGACAAAAAGATCA
TG
GAGATTCTGGCCACGGCTGGGAACGTTGTCACCCTGACCATCATCCCCAGTGTGATCTACGAGCACAT
G
GTCAAAAAGTTGCCTCCAGTCCTGCTCCACCACACCATGGACCACTCCATCCCAGATGCCTGA


Translation (207 aa):
MVAPVTGYSLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQI
D
GRDCAGWSSHKAHQVVKKASGDKIVVVVRD
RPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNG
L
LTNHYVCEVDGQNVIGLK
DKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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