NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS85368.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85368.1 Public Mus musculus 7 Usp17le 23 108 98 CCDS HistoryNCBI Gene:625530Re-query CCDS DB by CCDS ID:85368.1Re-query CCDS DB by GeneID:625530See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85368.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000211384.1 ENSMUSP00000147776.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211384.1Link to Ensembl Protein Viewer:ENSMUSP00000147776.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211384Re-query CCDS DB by Protein ID:ENSMUSP00000147776
Original member Current member NCBI NM_001256973.1 NP_001243902.1 Accepted alive Link to Nucleotide Sequence:NM_001256973.1Link to Protein Sequence:NP_001243902.1Re-query CCDS DB by Nucleotide ID:NM_001256973Re-query CCDS DB by Protein ID:NP_001243902Link to BLAST:NP_001243902.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243902.1 540 Q7M764 540 99.6296% 0 2

Chromosomal Locations for CCDS 85368.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 104768311 104769803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104770580 104770681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104777443 104777470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1623 nt):
ATGGTGGTTTCTCTTTCCTTCCCAGAAGAGACTGGAGGGGAAAATCTTCCTTCTGCTCCCTTAGAAGACT
CCAGCAAGTTCTTTGAAGAGGTCTTTGGAGACATGGTGGTTGCTCTTTCCTTCCCAGAAGCAGATCCAGC
ACTATCATCTCCTGATGCCCCAGAGCTGCATCAGGATGAAGCTCAGGTGGTGGAGGAGCTAACTACCAAT
GGAAAGCACAGTCTGAGTTGGGAGAGTCCCCAAGGACCAGGATGCGGGCTCCAGAACACAGGCAACAGCT
GCTACCTGAACGCAGCCCTGCAGTGCTTGACACACACACCACCTCTAGCTGACTACATGCTGTCCCAGGA
GCACAGTCAAACCTGTTGTTCCCCAGAAGGCTGTAAGATGTGTGCTATGGAAGCCCATGTGACCCAGAGT
CTCCTGCACTCTCACTCGGGGGATGTCATGAAGCCCTCCCAGATTTTGACCTCTGCCTTCCACAAGCACC
AGCAGGAAGATGCCCATGAGTTTCTCATGTTCACCTTGGAAACAATGCATGAATCCTGCCTTCAAGTGCA
CAGACAATCAGATCCCACCCCTCAGGATACGTCACCCATTCATGACATATTTGGAGGCTGGTGGAGGTCT
CAGATCAAGTGTCTCCATTGCCAGGGCACCTCACATACCTTCGATCCCTTCCTGGATGTCCCCCTGGATA
TCAGCTCAGCTCAGAGTGTAAATCAAGCCTTGTGGGATACAGGGAAGTCAGAAGAGCTACTTGGAGAGAA
TGCCTACTACTGTGGTAGGTGTAGACAGAAGATGCCAGCTTCTAAGACCCTGCATGTTCATATTGCTCCA
AAGGTACTCCTGCTAGTGTTAAAGCGCTTCTCAGCCTTCACGGGTAACAAGTTAGACAGAAAAGTAAGCT
ACCCGGAGTTCCTTGACCTGAAGCCATACCTGTCTGAGCCTACTGGAGGACCTTTGCCTTATGCCCTCTA
TGCCGTCCTGGTCCATGATGGTGCGACTTCTAACAGTGGACATTACTTCTGTTGTGTCAAAGCTGGTCAT
GGGAAGTGGTACAAGATGGATGATACTAAGGTCACCAGGTGTGATGTGACTTCTGTCCTGAATGAGAATG
CCTATGTGCTCTTCTATGTGCAGCAGACCGACCTCAAACAGGTCAGTATTGACATGCCAGAGGGCAGAGT
ACATGAGGTTCTTGACCCTAAATACCAGCTGAAGAAATCCCGGAGAAAAAAGCGTAAGAAGCAATGCCAT
TGCACAGATGATGCCGGAGAGGCATGCGAAAACAGGGAGAAGAGAGCAAAGAAAGAAACCTCCTTAGGGG
AGGGGAAAGTGCCTCAGGAAGTGAACCACGAGAAAGCTGGGCAGAAACATGGGAATACCAAACTCGTGCC
TCAGGAACAGAACCACCAGAGAGCTGGGCAGAACCTCAGGAATACTGAAGTTGAACTTGATCTGCCTGTT
GATGCAATTGTGATTCACCAGCCCAGATCCACAGCAAACTGGGGCACGGATGCTCCAGACAAAGAGAATC
AACCCTGGCACAATGGTGACAGGCTCCTCACCTCTCAGGGCCTCATGAGCCCTGGGCAGCTCTGTAGTCA
GGGTGGGAGATGA

Translation (540 aa):
MVVSLSFPEETGGENLPSAPLEDSSKFFEEVFGDMVVALSFPEADPALSSPDAPELHQDEAQVVEELTTN
GKHSLSWESPQGPGCGLQNTGNSCYLNAALQCLTHTPPLADYMLSQEHSQTCCSPEGCKMCAMEAHVTQS
LLHSHSGDVMKPSQILTSAFHKHQQEDAHEFLMFTLETMHESCLQVHRQSDPTPQDTSPIHDIFGGWWRS
QIKCLHCQGTSHTFDPFLDVPLDISSAQSVNQALWDTGKSEELLGENAYYCGRCRQKMPASKTLHVHIAP
KVLLLVLKRFSAFTGNKLDRKVSYPEFLDLKPYLSEPTGGPLPYALYAVLVHDGATSNSGHYFCCVKAGH
GKWYKMDDTKVTRCDVTSVLNENAYVLFYVQQTDLKQVSIDMPEGRVHEVLDPKYQLKKSRRKKRKKQCH
CTDDAGEACENREKRAKKETSLGEGKVPQEVNHEKAGQKHGNTKLVPQEQNHQRAGQNLRNTEVELDLPV
DAIVIHQPRSTANWGTDAPDKENQPWHNGDRLLTSQGLMSPGQLCSQGGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH