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Report for CCDS57028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57028.1 Public Mus musculus 16 Smbd1 23 108 98 CCDS HistoryNCBI Gene:381043Re-query CCDS DB by CCDS ID:57028.1Re-query CCDS DB by GeneID:381043See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57028.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179384.2 ENSMUSP00000137187.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179384.2Link to Ensembl Protein Viewer:ENSMUSP00000137187.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179384Re-query CCDS DB by Protein ID:ENSMUSP00000137187
Original member Current member NCBI NM_001256309.1 NP_001243238.1 Accepted alive Link to Nucleotide Sequence:NM_001256309.1Link to Protein Sequence:NP_001243238.1Re-query CCDS DB by Nucleotide ID:NM_001256309Re-query CCDS DB by Protein ID:NP_001243238Link to BLAST:NP_001243238.1

Chromosomal Locations for CCDS 57028.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 32804970 32805044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32806200 32806294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32806661 32806855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32810374 32810434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (426 nt):
ATGTGGTTTGCCTTTCTCCTCCTGCTGTGGCTGGGCCCTGTGATTCCAAACCAGAAGGCAGGCAGTTGTT
CCCAGCCCCAGCCTCTCTGCTGCCCCGGAGAGGATTATGGCTGCAAGAGAGGAAACTGCTATTGTGATAA
ATTCTGCCGTGTGCTATCAGACTGCTGCCCAGACCACGAGACCCTCTGCAACTCCAGTGACCTGCATGCA
GGCTCTCTTCCACCCGTGGCTCAGCTGGATGCTGTAACCCACAGAGCCTTTCACACTCCCAAGATGGTGC
TACAGATGGTGCTGAGGACCGAGAGGCCACTCGACTCAGCCAGGAACAATCAAGATTTGGTACAAAACAT
GGTTCTGCAGCTCCTCCACAGCCTCTCCAGAAGGCCACTCTCGGTGACTATGAAGGGAATCAGGAAGAGA
GCCTGA

Translation (141 aa):
MWFAFLLLLWLGPVIPNQKAGSCSQPQPLCCPGEDYGCKRGNCYCDKFCRVLSDCCPDHETLCNSSDLHA
GSLPPVAQLDAVTHRAFHTPKMVLQMVLRTERPLDSARNNQDLVQNMVLQLLHSLSRRPLSVTMKGIRKR
A


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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