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Report for CCDS2305.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2305.1 Public Homo sapiens 2 INPP1 24 110 108 CCDS HistoryNCBI Gene:3628Re-query CCDS DB by CCDS ID:2305.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2305.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322522.8 ENSP00000325423.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000322522.8Link to Ensembl Protein Viewer:ENSP00000325423.4Re-query CCDS DB by Nucleotide ID:ENST00000322522Re-query CCDS DB by Protein ID:ENSP00000325423
Original member Current member EBI ENST00000392329.7 ENSP00000376142.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392329.7Link to Ensembl Protein Viewer:ENSP00000376142.2Re-query CCDS DB by Nucleotide ID:ENST00000392329Re-query CCDS DB by Protein ID:ENSP00000376142
Original member Current member NCBI NM_001128928.2 NP_001122400.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001128928.2Link to Protein Sequence:NP_001122400.1Re-query CCDS DB by Nucleotide ID:NM_001128928Re-query CCDS DB by Protein ID:NP_001122400Link to BLAST:NP_001122400.1
Original member Current member NCBI NM_002194.4 NP_002185.1 Accepted alive Link to Nucleotide Sequence:NM_002194.4Link to Protein Sequence:NP_002185.1Re-query CCDS DB by Nucleotide ID:NM_002194Re-query CCDS DB by Protein ID:NP_002185Link to BLAST:NP_002185.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001122400.1 399 P49441 399 100% 0 0
NP_002185.1 399 P49441 399 100% 0 0

Chromosomal Locations for CCDS 2305.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 190360103 190360306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 190362627 190362687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 190366695 190366895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 190369103 190369277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 190370844 190371402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGTCAGATATCCTCCGGGAGCTGCTCTGTGTCTCTGAGAAGGCTGCTAACATTGCCCGGGCGTGCAGAC
AG
CAGGAAGCCCTCTTCCAGCTGCTGATCGAAGAAAAGAAAGAGGGAGAAAAGAACAAGAAGTTTGCAGT
T
GACTTCAAGACGCTGGCTGATGTACTGGTACAGGAAGTTATAAAACAGAATATGGAGAACAAGTTTCCA
GGC
TTGGAAAAAAATATTTTTGGAGAAGAATCCAATGAGTTTACTAATGACTGGGGGGAAAAGATTACCT
TG
AGGTTGTGTTCAACAGAGGAGGAAACAGCAGAGCTTCTTAGCAAAGTCCTCAATGGTAACAAGGTGGC
A
TCTGAAGCATTAGCCAGGGTTGTTCATCAGGATGTTGCCTTTACTGACCCAACTCTGGATTCCACAGAG
ATC
AATGTTCCACAGGACATTTTGGGAATTTGGGTGGACCCCATAGATTCAACTTATCAGTATATAAAAG
GT
TCTGCTGACATTAAATCCAACCAGGGAATCTTCCCCTGTGGACTTCAGTGTGTCACCATTTTAATTGG
T
GTCTATGACATACAGACAGGGGTTCCCCTGATGGGAGTCATCAATCAACCTTTTGTGTCACGAGATCCA
AAC
ACCCTCAGGTGGAAAGGACAGTGCTATTGGGGCCTTTCTTACATGGGGACCAACATGCATTCACTAC
AG
CTCACCATCTCTAGAAGAAACGGCAGTGAAACACACACTGGAAACACCGGCTCTGAGGCAGCATTCTC
C
CCCAGTTTTTCAGCCGTAATTAGTACAAGTGAAAAGGAGACTATCAAAGCTGCATTGTCACGTGTGTGT
GGA
GATCGCATATTTGGGGCAGCTGGGGCTGGTTATAAGAGCCTATGTGTTGTCCAAGGCCTCGTTGACA
TT
TACATCTTTTCAGAAGATACCACATTCAAATGGGACTCTTGTGCTGCTCATGCCATACTGAGGGCCAT
G
GGTGGGGGAATAGTAGACTTGAAAGAATGCTTAGAAAGAAATCCAGAAACAGGGCTTGATTTGCCACAG
TTG
GTGTACCACGTGGAAAATGAGGGTGCTGCTGGGGTGGATCGGTGGGCCAACAAGGGAGGACTCATTG
CA
TACAGATCCAGGAAGCGGCTGGAGACATTCCTGAGCCTCCTGGTCCAAAACCTGGCACCTGCAGAGAC
G
CATACCTAG


Translation (399 aa):
MSDILRELLCVSEKAANIARACRQQEALFQLLIEEKKEGEKNKKFAVDFKTLADVLVQEVIKQNMENKFP
G
LEKNIFGEESNEFTNDW
GEKITLRLCSTEEETAELLSKVLNGNKVASEALARVVHQDVAFTDPTLDSTE
I
NVPQDILGIWVDPI
DSTYQYIKGSADIKSNQGIFPCGLQCVTILIGVYDIQTGVPLMGVINQPFVSRDP
N
TL
RWKGQCYWGLSYMGTNMHSLQLTISRRNGSETHTGNTGSEAAFSPSFSAVISTSEKETIKAALSRVC
G
DRIFGAAGAGYKSLCVVQGLVDIYIFSEDTTFKWDSCAAHAILRAMGGGIVDLKECLERNPETGLDLPQ
L
VYHVENEGAAGVDRWANKGGLIAYRSRKRLETFLSLLVQNLAPAETHT




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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