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Report for CCDS57630.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57630.1 Public Mus musculus 8 Irx3 23 108 98 CCDS HistoryNCBI Gene:16373Re-query CCDS DB by CCDS ID:57630.1Re-query CCDS DB by GeneID:16373See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57630.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093312.5 ENSMUSP00000091002.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093312.5Link to Ensembl Protein Viewer:ENSMUSP00000091002.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000093312Re-query CCDS DB by Protein ID:ENSMUSP00000091002
Original member Current member NCBI NM_001253822.1 NP_001240751.1 Accepted alive Link to Nucleotide Sequence:NM_001253822.1Link to Protein Sequence:NP_001240751.1Re-query CCDS DB by Nucleotide ID:NM_001253822Re-query CCDS DB by Protein ID:NP_001240751Link to BLAST:NP_001240751.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240751.1 522 P81067-2 522 100% 0 0

Chromosomal Locations for CCDS 57630.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 91798891 91798976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91799411 91799477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91799659 91800798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91800965 91801240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1569 nt):
ATGTCCTTCCCCCAGCTCGGATACCAGTACATCCGCCCTCTCTACCCACCCGAACGCCCGGGAGCTGCGG
GCGGCGGTGGAGGCGGCAGTAGCGCTGGGGGCCGGAGCGGTCCCGGCGCCGGAGCCTCCGAGTTGGCCGC
CTCTGGGTCCCTATCCAATGTGCTTTCATCAGTGTACGGGGCACCCTACGCCGCTGCCGCAGCTGCCGCC
GCCGCCGCTCAGGGTTACGGCGCCTTCCTGCCCTACGCCACGGAGCTGCCCATCTTCCCACAGCTGGGCG
CTCAGTATGAGCTGAAGGACAGCCCTGGCGTCCAGCATCCGGCCACGGCCGCCGCGTTCCCGCACCCGCA
CCCCGCCTTCTACCCCTATGGCCAGTACCAGTTCGGGGACCCGTCCCGTCCCAAGAACGCCACCCGGGAA
AGCACGAGCACGCTCAAGGCCTGGCTCAACGAGCACCGCAAGAACCCGTACCCCACCAAGGGCGAGAAGA
TCATGTTGGCCATCATCACCAAGATGACCCTCACCCAGGTGTCCACCTGGTTCGCCAACGCGCGCCGGCG
CCTCAAGAAGGAGAACAAGATGACGTGGGCTCCCCGTAGTCGCACGGACGAGGAGGGCAATGCTTATGGG
AGCGAGCGGGAGGAGGAGGACGAAGAGGAAGACGAGGAAGAGAGCAAACGCGAGCTGGAGATGGAGGAGG
AGGAGCTCGCAGGAGAGGAGGAGGACACGGGGGGCGAGGGGCTGGCCGACGACGACGAGGATGAGGAGAT
CGATTTGGAAAACTTAGACAGCGCGGCAGCCGGGTCGGAGCTGACCCTGGCTGGGGCGGCGCACAGGAAC
GGCGACTTCGGCCTGGGACCCATTTCGGACTGCAAAACTAGCGACTCGGACGACAGCTCCGAAGGCTTGG
AGGACCGACCACTGTCGGTCCTGAGCCTGGCCCCACCGCCACCGCCCGTGGCCAGGGCTCCTGCATCTCC
ACCTTCTCCACCCTCCAGCCTGGATCCCTGCGCTCCGGCCCCGGCGCCCTCCTCCGCCCTCCAGAAGCCC
AAGATCTGGTCACTGGCCGAGACGGCCACCAGCCCGGACAACCCACGCCGCTCGCCTCCCGGAGCCGGAG
GTTCGCCTCCCGGCGCAGCCGTTGCGCCCCCGACGCTGCAGCTCTCGCCCGCGGCCGCTGCAGCGGCTGC
AGCGGCACACAGACTCGTGTCGGCGCCGCTTGGCAAATTCCCCGCTTGGACCAACAGGCCTTTCCCAGGG
CCGCCGGCCGGTCCGCGGCCGCACCCGCTGTCCATGCTGGGCTCGGCCCCACAGCACCTGCTGGGACTTC
CCGGAGCCGCAGGTCATCCCGCTGCGGCCGCAGCCGCCTATGCTCGGCCTGCCGAGCCGGAGAGTGGAAC
AGGTGACAAGAAAAATATCGCTGTAGTGCCTTGGAAGTGGAGAAAAAGTTACTCAAGACAGCTTTCCAGC
CGGTGCCAAGGCGGCCACAGAACCATCTGGACGCTGCTCTGGTCTTATCAGCTCTCTCCTCGTCTTAACT
TTTCAACCATTTTTAAATCGTTGTACTAA

Translation (522 aa):
MSFPQLGYQYIRPLYPPERPGAAGGGGGGSSAGGRSGPGAGASELAASGSLSNVLSSVYGAPYAAAAAAA
AAAQGYGAFLPYATELPIFPQLGAQYELKDSPGVQHPATAAAFPHPHPAFYPYGQYQFGDPSRPKNATRE
STSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWAPRSRTDEEGNAYG
SEREEEDEEEDEEESKRELEMEEEELAGEEEDTGGEGLADDDEDEEIDLENLDSAAAGSELTLAGAAHRN
GDFGLGPISDCKTSDSDDSSEGLEDRPLSVLSLAPPPPPVARAPASPPSPPSSLDPCAPAPAPSSALQKP
KIWSLAETATSPDNPRRSPPGAGGSPPGAAVAPPTLQLSPAAAAAAAAAHRLVSAPLGKFPAWTNRPFPG
PPAGPRPHPLSMLGSAPQHLLGLPGAAGHPAAAAAAYARPAEPESGTGDKKNIAVVPWKWRKSYSRQLSS
RCQGGHRTIWTLLWSYQLSPRLNFSTIFKSLY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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