NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27209.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27209.1 Public Mus musculus 14 Msra 23 108 98 CCDS HistoryNCBI Gene:110265Re-query CCDS DB by CCDS ID:27209.1Re-query CCDS DB by GeneID:110265See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27209.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067927.8 ENSMUSP00000065754.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067927.8Link to Ensembl Protein Viewer:ENSMUSP00000065754.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000067927Re-query CCDS DB by Protein ID:ENSMUSP00000065754
Original member Current member NCBI NM_001253712.1 NP_001240641.1 Accepted alive Link to Nucleotide Sequence:NM_001253712.1Link to Protein Sequence:NP_001240641.1Re-query CCDS DB by Nucleotide ID:NM_001253712Re-query CCDS DB by Protein ID:NP_001240641Link to BLAST:NP_001240641.1
Original member Current member NCBI NM_026322.4 NP_080598.2 Accepted alive Link to Nucleotide Sequence:NM_026322.4Link to Protein Sequence:NP_080598.2Re-query CCDS DB by Nucleotide ID:NM_026322Re-query CCDS DB by Protein ID:NP_080598Link to BLAST:NP_080598.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240641.1 233 Q9D6Y7-1 233 100% 0 0
NP_080598.2 233 Q9D6Y7-1 233 100% 0 0

Chromosomal Locations for CCDS 27209.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 64123189 64123353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 64210428 64210534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 64233829 64233933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 64285064 64285183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 64313687 64313755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 64440710 64440845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGCTCTCCGCCTCTAGAAGGGCTCTCCAGCTCCTCTCTAGCGCCAACCCGGTACGGAGGATGGGCGACT
CAGCTTCGAAAGTCATCTCCGCAGAGGAAGCCTTGCCGGGACGCACCGAGCCGATCCCTGTAACAGCCAA
ACACCATGTCAGTGGCAACAGAACGGTTGAACCTTTCCCAGAGGGAACACAGATGGCTGTATTTGGAATG
GGCTGCTTCTGGGGAGCTGAGCGCAAGTTCTGGGTCTTGAAAGGAGTGTACTCAACCCAAGTGGGCTTTG
CAGGAGGCCACACACGCAATCCCACCTACAAAGAGGTCTGCTCAGAAAAAACTGGCCACGCCGAAGTCGT
CCGGGTTGTGTACCGGCCAGAGCACATCAGCTTTGAGGAACTGCTCAAGGTCTTCTGGGAGAATCACGAC
CCGACCCAAGGCATGCGCCAAGGCAATGACTTTGGTACACAGTACCGGTCAGCAGTCTATCCCACATCCG
CCGTGCAGATGGAAGCAGCCCTGAGATCCAAGGAAGAATACCAAAAGGTTCTTTCAAAGCATAACTTTGG
CCCCATCACCACCGACATCCGAGAGGGACAAGTGTTCTACTATGCCGAAGACTACCACCAGCAATACCTG
AGCAAGAACCCAGACGGCTACTGTGGCCTCGGGGGTACTGGAGTTTCCTGCCCGATGGCCATTAAAAAAT
AA

Translation (233 aa):
MLSASRRALQLLSSANPVRRMGDSASKVISAEEALPGRTEPIPVTAKHHVSGNRTVEPFPEGTQMAVFGM
GCFWGAERKFWVLKGVYSTQVGFAGGHTRNPTYKEVCSEKTGHAEVVRVVYRPEHISFEELLKVFWENHD
PTQGMRQGNDFGTQYRSAVYPTSAVQMEAALRSKEEYQKVLSKHNFGPITTDIREGQVFYYAEDYHQQYL
SKNPDGYCGLGGTGVSCPMAIKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH