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Report for CCDS56754.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56754.1 Public Mus musculus 11 Patz1 23 108 98 CCDS HistoryNCBI Gene:56218Re-query CCDS DB by CCDS ID:56754.1Re-query CCDS DB by GeneID:56218See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56754.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093402.11 ENSMUSP00000091103.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093402.11Link to Ensembl Protein Viewer:ENSMUSP00000091103.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000093402Re-query CCDS DB by Protein ID:ENSMUSP00000091103
Original member Current member NCBI NM_001253690.1 NP_001240619.1 Accepted alive Link to Nucleotide Sequence:NM_001253690.1Link to Protein Sequence:NP_001240619.1Re-query CCDS DB by Nucleotide ID:NM_001253690Re-query CCDS DB by Protein ID:NP_001240619Link to BLAST:NP_001240619.1

Chromosomal Locations for CCDS 56754.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 3290614 3291884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3293280 3293343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3299034 3299205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3306288 3306360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3307648 3307681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1614 nt):
ATGGAGCGGGTCAACGACGCTTCTTGCGGTCCGTCGGGCTGCTACACCTACCAGGTGAGCAGACACAGTA
CGGAGATGCTGCACAACCTGAACCAACAACGCAAAAACGGCGGGCGCTTTTGCGACGTGCTCCTACGAGT
AGGCGACGAGAGCTTCCCAGCGCACCGCGCCGTACTGGCTGCCTGCAGCGAGTACTTTGAGTCTGTGTTC
AGCGCCCAGTTAGGCGACGGCGGAGCTGCAGATGGTGGTCCTGCTGATGTGGGAGGCGCGGCGGCGGCTC
CAGGCGGCGGAGCTGGAGGCAGCCGCGAACTGGAGATGCACACCATCAGTTCCAAAGTGTTCGGAGACAT
CCTGGACTTCGCTTATACGTCCCGAATCGTTGTGCGCCTAGAGAGCTTCCCCGAGCTCATGACGGCCGCC
AAGTTCCTGCTGATGAGGTCGGTCATCGAGATCTGCCAGGAAGTAATCAAACAGTCCAACGTGCAGATCC
TCGTGCCCCCTGCCCGGGCTGATATCATGCTCTTTCGCCCACCTGGGACTTCTGACTTGGGCTTCCCTTT
GGACATGACCAACGGGGCAGCCATGGCAGCCAACAGTAACGGTATTGCTGGCAGTATGCAGCCCGAGGAG
GAGGCTGCCAGGGCCACAGGTGCTGCTATTGCGGGCCAAGCTTCTCTGCCTGTGTTACCCGGGGTGGACA
GATTGCCCATGGTGGCTGGACCCCTATCCCCCCAACTACTGACTTCTCCGTTCCCTAATGTGGCATCCAG
TGCACCTCCACTAACTAGCAAGCGAGGCCGGGGACGCCCCAGGAAGGCCAACCTGCTGGACTCCATGTTT
GGGTCTCCAGGGGGCTTGAGGGAAGCAGGCATCCTTCCATGTGGCCTGTGCGGGAAGGTGTTCACTGACG
CCAACCGGCTCCGGCAACATGAGGCCCAGCACGGCGTCACAAGCCTCCAGTTGGGCTATATCGATCTTCC
TCCTCCAAGGCTGGGTGAGAATGGGTTACCCATCTCCGAGGACCCCGATGGCCCCAGAAAAAGGAGCCGG
ACCAGGAAGCAAGTGGCTTGTGAGATCTGTGGCAAGATCTTTCGTGACGTATACCATCTCAACCGGCATA
AGCTTTCCCACTCGGGGGAGAAGCCGTACTCGTGCCCGGTGTGTGGTCTGCGGTTCAAGAGAAAAGACCG
AATGTCGTACCATGTGAGGTCCCATGATGGGTCAGTGGGCAAACCGTACATCTGCCAGAGCTGTGGGAAA
GGTTTCTCCAGGCCAGATCACTTGAATGGACATATCAAGCAGGTGCACACTTCTGAGCGACCTCACAAGT
GTCAGACCTGCAATGCCTCCTTTGCGACTCGAGACCGCCTGCGCTCCCACCTGGCCTGTCATGAAGACAA
GGTGCCCTGCCAGGTGTGTGGAAAGTACTTGCGGGCCGCATACATGGCAGACCACCTGAAGAAGCACAGT
GAGGGGCCCAGCAACTTCTGTAGCATCTGTAACCGAGGTCTCCAGGCACCAGGAACCCATCCTGAATGGG
GGAGCAGCGTTCCACTGCGCCAGGACCTATGGCAACAAAGAAGGCCAGAAATGCTCACATCAGGATCTGA
TTGA

Translation (537 aa):
MERVNDASCGPSGCYTYQVSRHSTEMLHNLNQQRKNGGRFCDVLLRVGDESFPAHRAVLAACSEYFESVF
SAQLGDGGAADGGPADVGGAAAAPGGGAGGSRELEMHTISSKVFGDILDFAYTSRIVVRLESFPELMTAA
KFLLMRSVIEICQEVIKQSNVQILVPPARADIMLFRPPGTSDLGFPLDMTNGAAMAANSNGIAGSMQPEE
EAARATGAAIAGQASLPVLPGVDRLPMVAGPLSPQLLTSPFPNVASSAPPLTSKRGRGRPRKANLLDSMF
GSPGGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQLGYIDLPPPRLGENGLPISEDPDGPRKRSR
TRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGK
GFSRPDHLNGHIKQVHTSERPHKCQTCNASFATRDRLRSHLACHEDKVPCQVCGKYLRAAYMADHLKKHS
EGPSNFCSICNRGLQAPGTHPEWGSSVPLRQDLWQQRRPEMLTSGSD


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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