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Report for CCDS56761.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56761.1 Public Mus musculus 11 Aftph 23 108 98 CCDS HistoryNCBI Gene:216549Re-query CCDS DB by CCDS ID:56761.1Re-query CCDS DB by GeneID:216549See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56761.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000177543.7 ENSMUSP00000134991.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177543.7Link to Ensembl Protein Viewer:ENSMUSP00000134991.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177543Re-query CCDS DB by Protein ID:ENSMUSP00000134991
Original member Current member NCBI NM_001252503.2 NP_001239432.1 Accepted alive Link to Nucleotide Sequence:NM_001252503.2Link to Protein Sequence:NP_001239432.1Re-query CCDS DB by Nucleotide ID:NM_001252503Re-query CCDS DB by Protein ID:NP_001239432Link to BLAST:NP_001239432.1

Chromosomal Locations for CCDS 56761.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 20686173 20686198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20698313 20698373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20703711 20703833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20708681 20708737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20709620 20709746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20712164 20712315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20725685 20727607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2469 nt):
ATGGAGCCAGACATCATTCGAATGTACTCTTCCTCCCCCCCACCTCTAGACAACGGAGCAGAGGATGATG
AGGAGGATGAGTTTGGGGAGTTTGGTGGGTTTTCGGAAGTCAGCCCTTCTGGTGTAGGGTTTGTTGATTT
TGACACACCAGATTATACTCGTCCCAAGGAAGACTTTGTACCTTCAAACCACTTTATGCCAATTCATGAA
TATTCAGAAGATGTAGATAGCCTTACAAGCTTTAAGTCTGTTCAGAATGGTAATGATAAGGATATCACTG
CTGAACTTTCTACTCCTGTGAAAAGTCAATCTGATGTTGTACTTTCTACCACCAGCAAAGAAATGATTCC
ATCTAAAACTTTGGATCCTTCCATCGATGGTATGGAAAGCCTGGAAGACTTAGATAAAGTAGTGGTGCAG
GGACCAAGCACTGGGCAACTCAGAAGTTTCTCTCCTGGAGATTTTAGAACTGATAAGAACATTGTTCACC
AAACCAAGCAGTTAGAGAGCTGCAACGGTGAAAAGCCTCCTTGTCTGGAAATTCTAACAAACGGGTTTGC
AGGTTTGGAAACTGTAAATCCTCAGGGAACAGATGACCTGGACAATGTGGCAGATTCAAAGGGATCGAAG
CCTCTTAACACTTGTGGCACCGAGTGCATTTTAGAGTCTGCAGCTAGTCATGCTACGGAATTTGCAGATT
TTTCTACATTTTCCCAAACAGAAAGGACACAACTGGAAGAAATAGAATGTCCAGTTTTAAATGATGGTGA
TACACTGACCATTCAGGGAAACAGCAAAGGCCCCAGAGTCAAGGAACTAAACTGTGTGAAAGAAGTGACT
TTGGATGGAAGCTTTGAGGATACGGGGAACACTGAAAGAGAACATCAGGTCTGCGTCTCAGAAATCCATG
CCGTAGCTGACAGAGGGCTCAGTGTTGAAAAACAAGACCTTCAAACACTGCAACAGGATGAGTTTCTAAA
TTCAAGGATTCAGTCTGAGGCTTGGAGCTTGGTAGACTCAAGTGAAAATTCAGAAGCCATTACAAAGGAG
CGGTGTAAAATGGAAAAAAATGACTTATTTGCCTCTAAGTGTGCTGACTTATCCATGGATTCTGTTAAAA
CTTCAGACGTTAATGAAATTGGTTCTTCCAAAGAAGAAAACAGAAAGCTGACTAATCCCAAAAGCCCAGA
CCCTGATCCCACAGGACAAAATGCTTTGGATGATTCTGCTGCAAGCATGAAAAATGGTGACAGTGGGAAT
GGCTTTGTGACTTGTCATGATACCAATGAGGATGATTTTGGTGACTTTGGTACAGCCAATGGCACCACTC
CACCCTTTGTTACTAGTACTCAAGATTCAATGAGTGACGTCACTTTTGAAGACTCCTCAGAGCATTTTCT
ACATCTTAGTGAACCAGGTGATGATTTTGGAGAATTTGAGGATACAAATGCTGTTTCTTGTCAAGAGGAA
ATGAGATTTACTGAGTCAGACCTAAGACAGACTTCTGATGGCTTATCAGAGGAATGTCCATTGGCAGGAG
AGTCTGGTGGAAAAGACAGTAAACCTGACTCAAAACTGAAAAATGGTCAAGACAGTGAATTTGGAGATTT
TGATTCTGTGCCAAATACTCAAGGTAGTGCTTTTCAAGACTCGGATGATTTTGCAGACTTCAGTTCAGCA
GGTCCTAGCCAAGCTGTAGATTGGAATGCTTTTGAGGATGAACAGAAAGATGGTTGTTCTTGGGCTGCCT
TTGGGGATCAGCAGGAGACTGAGTCTCATCATCTAAAGGAAGTCTGGCAGTCACAGAGGACAGATGAAAC
TATGGGCACTCTGGGAACCCCTAAGATGCACAGTGTTTCTTCAGCAGCTTCCAAAGGAGCAGTTGCTAGT
GGCCATTTGCAGGAACCAGGCACTTCAGTTCAGACAGCTTTACTCAACCGGTTGGAGAGAATTTTCGAAG
CCTGTTTTCCGTCTGTGTTTGTCCCTGATGTGGAAGAGGAGGTTTCTTCCCTGAAGCACTTGCTGGAGAC
ACACAGCTCGCCAGCAAAAACAAGAGAGGCCTTAGCTGACCGTGGTGAGTTGAGGGGTGTATGGACCGAA
CTGCAGGACATCCATGATGCACATGGTTTGCGGTACCAGTGGGGTGGCTCACATAGCAACAAGAAGCTTT
TGTGCTCCTTGGGAATAGACACTCGAAACATTCTATTCACTGGCAATAAGAAGCAACCTGTTATAGTGCC
CATGTATGCAGCAGGATTGGGAATGTTAGAGCCCACCAAGGAACCATTAAAACCACTATCTGCTGCAGAA
AAAATTGCTTCTATTGGTCAGACAACCGTTATGACACCAGAAATAAACACGTGTACATCTGATCCATTCC
AGGAGTCTCTCCCACCTGTCCAGTTTGACTGGAGTAGCAGTGGCCTTACTAACCCTTTAGATGGAAACCA
AAAAGAGAGGAGCACCTGA

Translation (822 aa):
MEPDIIRMYSSSPPPLDNGAEDDEEDEFGEFGGFSEVSPSGVGFVDFDTPDYTRPKEDFVPSNHFMPIHE
YSEDVDSLTSFKSVQNGNDKDITAELSTPVKSQSDVVLSTTSKEMIPSKTLDPSIDGMESLEDLDKVVVQ
GPSTGQLRSFSPGDFRTDKNIVHQTKQLESCNGEKPPCLEILTNGFAGLETVNPQGTDDLDNVADSKGSK
PLNTCGTECILESAASHATEFADFSTFSQTERTQLEEIECPVLNDGDTLTIQGNSKGPRVKELNCVKEVT
LDGSFEDTGNTEREHQVCVSEIHAVADRGLSVEKQDLQTLQQDEFLNSRIQSEAWSLVDSSENSEAITKE
RCKMEKNDLFASKCADLSMDSVKTSDVNEIGSSKEENRKLTNPKSPDPDPTGQNALDDSAASMKNGDSGN
GFVTCHDTNEDDFGDFGTANGTTPPFVTSTQDSMSDVTFEDSSEHFLHLSEPGDDFGEFEDTNAVSCQEE
MRFTESDLRQTSDGLSEECPLAGESGGKDSKPDSKLKNGQDSEFGDFDSVPNTQGSAFQDSDDFADFSSA
GPSQAVDWNAFEDEQKDGCSWAAFGDQQETESHHLKEVWQSQRTDETMGTLGTPKMHSVSSAASKGAVAS
GHLQEPGTSVQTALLNRLERIFEACFPSVFVPDVEEEVSSLKHLLETHSSPAKTREALADRGELRGVWTE
LQDIHDAHGLRYQWGGSHSNKKLLCSLGIDTRNILFTGNKKQPVIVPMYAAGLGMLEPTKEPLKPLSAAE
KIASIGQTTVMTPEINTCTSDPFQESLPPVQFDWSSSGLTNPLDGNQKERST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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