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Report for CCDS56885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56885.1 Public Mus musculus 13 Catsper3 23 108 98 CCDS HistoryNCBI Gene:76856Re-query CCDS DB by CCDS ID:56885.1Re-query CCDS DB by GeneID:76856See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56885.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021961.11 ENSMUSP00000021961.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021961.11Link to Ensembl Protein Viewer:ENSMUSP00000021961.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021961Re-query CCDS DB by Protein ID:ENSMUSP00000021961
Original member Current member NCBI NM_001252487.1 NP_001239416.1 Accepted alive Link to Nucleotide Sequence:NM_001252487.1Link to Protein Sequence:NP_001239416.1Re-query CCDS DB by Nucleotide ID:NM_001252487Re-query CCDS DB by Protein ID:NP_001239416Link to BLAST:NP_001239416.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239416.1 395 Q80W99-1 395 100% 0 0

Chromosomal Locations for CCDS 56885.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55784662 55784759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55786366 55786519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55798744 55798983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55804784 55804966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55805714 55805854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55806237 55806356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55808020 55808174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55808823 55808919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGTCCCAACATTTTCACCACAACCCTGTACGAGTCAAGTCGGGCTCACTGTTTGCTACAGCATCGGAAG
CATTGCAGGCAAGACTGAGCAAGATTAAGAGGAAGGATAAGGAGTGCCAGGCTTACTTCAGGAAGGTTAT
TAAGAGCACTTTCTTCCAGATTGTGATGATCACCACGGTCACCACCAACTCCTTTTTACTGGTCTTGGGG
ACTAATTATGACATACAATTCGAGTTTTTCAGAACCTTTGAGGTCTCAGAGCTTTTCTTTGTATCTGTCT
ATGTCTGCGAGTTCCTCATGAAGGTCTATGTGGACCCCATTACATACTGGAAGGATGGCTATAACATACT
GGATGTGATCATTCTCATCATTCTCACCATACCCTATCTCCTCCGCAAAATCAAGGGGAATCATTCTGCA
TACCTCCACTTTGCTGATGGCATCCAGTCTCTACGAATCCTCAAGCTTATCTCCTACAGTAGGGGCATCA
GGACACTCATCATCGCTGTGGGGGAGACGGTCTACACTGTGGCCTCGGTGCTGACGCTGCTCTTCCTCCT
CATGTTTGTGTTCGCGATCCTGGGATTCTGCCTATTTGGCGTGACGGACAGAGGCGACCTGGAGAACTGG
GGGAACCTGGCTTCAGCTTTCTTTACTCTCTTCAGTTTGGCCACGGTTGATGGCTGGACTGACCTGCAGG
AAGAGCTGGACAAGAGGAAGTTTACTGTGAGCCGGGCGTTTACTATCCTCTTCATCTTGCTTGCATCCTT
CATCTTCCTCAACATGTTTGTGGGTGTGATGATCATGCACACGGAGGATTCCATGAAAAAGTTTGAGCGG
GATCTGACGTTGGAGAGGAACCTTGCGATTATGGAGGAGAAGCAAATAATCCTGAAACGCCAGCAAGAGG
AGGTCAACAGGCTGATGAACACACAGAAAAGTGGTAGCATGAACTTCATTGATATGGTGGAGGGCTTCAA
GAAGACCCTGCGGCACACAGACCCCATGGTTCTGGATGACTTCAGCACTAGTCTCTCCTTCATTGATATC
TACTTGGTCACTCTGGACAACCAAGATGTTATTGTCAGCAAGCTTCAGGAGCTCTACTGTGAGATTGTGA
ACGTGCTGAGCCTGATGTTGGAAGACATGCCCAAGGAGAGCTCGTCCAGCCTCTCGGGACTAAGTTAG

Translation (395 aa):
MSQHFHHNPVRVKSGSLFATASEALQARLSKIKRKDKECQAYFRKVIKSTFFQIVMITTVTTNSFLLVLG
TNYDIQFEFFRTFEVSELFFVSVYVCEFLMKVYVDPITYWKDGYNILDVIILIILTIPYLLRKIKGNHSA
YLHFADGIQSLRILKLISYSRGIRTLIIAVGETVYTVASVLTLLFLLMFVFAILGFCLFGVTDRGDLENW
GNLASAFFTLFSLATVDGWTDLQEELDKRKFTVSRAFTILFILLASFIFLNMFVGVMIMHTEDSMKKFER
DLTLERNLAIMEEKQIILKRQQEEVNRLMNTQKSGSMNFIDMVEGFKKTLRHTDPMVLDDFSTSLSFIDI
YLVTLDNQDVIVSKLQELYCEIVNVLSLMLEDMPKESSSSLSGLS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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