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Report for CCDS28455.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28455.1 Public Mus musculus 17 Hcfc1r1 23 108 98 CCDS HistoryNCBI Gene:353502Re-query CCDS DB by CCDS ID:28455.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28455.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024697.4 ENSMUSP00000024697.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024697.4Link to Ensembl Protein Viewer:ENSMUSP00000024697.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000024697Re-query CCDS DB by Protein ID:ENSMUSP00000024697
Original member Current member EBI ENSMUST00000180140.7 ENSMUSP00000137336.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180140.7Link to Ensembl Protein Viewer:ENSMUSP00000137336.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180140Re-query CCDS DB by Protein ID:ENSMUSP00000137336
Original member NCBI NM_181821.2 NP_861542.1 Updated not alive Link to Nucleotide Sequence:NM_181821.2Link to Protein Sequence:NP_861542.1Re-query CCDS DB by Nucleotide ID:NM_181821Re-query CCDS DB by Protein ID:NP_861542
Current member NCBI NM_181821.3 NP_861542.1 Accepted alive Link to Nucleotide Sequence:NM_181821.3Link to Protein Sequence:NP_861542.1Re-query CCDS DB by Nucleotide ID:NM_181821Re-query CCDS DB by Protein ID:NP_861542Link to BLAST:NP_861542.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_861542.1 120 Q9CYQ5 120 100% 0 0

Chromosomal Locations for CCDS 28455.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 23673983 23674068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23674535 23674675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23674884 23675019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (363 nt):
ATGATCCTGCAACAGCCCCTGGAGCGAGGTCCCCCAAGTCGGGACCCACGGGCCACCACTGGGGTAACTC
GCGGCCTAAACGCCAGTCTTTCCCCCAGGGAACCTTTGCACAAGCAGTTCCTGTCTGAGGAGAACATGGC
CACCCATTTCTCCCGACTCAGCCTACATAATGACCACCCCTACTGCAGCCCCCCTGTGACTTTTCCCGAA
GCCCTGCCACCACTCAGGAGCCCTTGCCCAGAGCTGCTTCTCTGGCGCTATCCCGGGAGCCTGATTCCTG
AAGCCCTCAGGCTGCTGAGGCTGGGGGATACCCCCAGTCCCTACTACCCTGCGTCCCCAGCTGGGGATAT
CGTGGAGCTCTGA

Translation (120 aa):
MILQQPLERGPPSRDPRATTGVTRGLNASLSPREPLHKQFLSEENMATHFSRLSLHNDHPYCSPPVTFPE
ALPPLRSPCPELLLWRYPGSLIPEALRLLRLGDTPSPYYPASPAGDIVEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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