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Report for CCDS29168.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29168.1 Public Mus musculus 18 Pcdhac2 23 108 98 CCDS HistoryNCBI Gene:353237Re-query CCDS DB by CCDS ID:29168.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29168.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047479.2 ENSMUSP00000039888.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047479.2Link to Ensembl Protein Viewer:ENSMUSP00000039888.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000047479Re-query CCDS DB by Protein ID:ENSMUSP00000039888
Original member Current member NCBI NM_001003672.2 NP_001003672.1 Accepted alive Link to Nucleotide Sequence:NM_001003672.2Link to Protein Sequence:NP_001003672.1Re-query CCDS DB by Nucleotide ID:NM_001003672Re-query CCDS DB by Protein ID:NP_001003672Link to BLAST:NP_001003672.1

Chromosomal Locations for CCDS 29168.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37143969 37146530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37156155 37156213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37159265 37159353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37184946 37185256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3021 nt):
ATGGAGCAGGCGGGAGCCAGACCTGGGGCGACAGAGCATCCGCGACCCCTGCGGCCCTTGCCCTGGCTGC
TGCTTCTGTCTTTCCGACTGCTGCTGGTGCTGCTGCCAGGCCCAGCGGCCTCCCAGCTACGATACTCCGT
GCCGGAGGAGCAGAGCCCCGGCGCGCTCGTGGGCAACGTGGCCAGAGCCTTGGGGCTAGAACTGCGGCGC
TTGGGACCTGGCTGTCTGCGCATCAACCATTTGGGTGCACCCAGCCCGCGCTACCTGGAACTGGACTTGA
CCAATGGAGCGCTCTTCGTCAACGAGCGGATAGATCGCGAGGCGCTGTGCGAGCAGCGGCCTCGCTGCCT
GCTCAGCTTGGAAGTGCTGGCTCACAACCCTGTGGCAGTGAGCGCGATCGAGGTGGAAATACTGGACATC
AATGACAACTCTCCGCGCTTCCCGCGGCCGGATTATCAGCTTCAGGTAAGCGAATCCGTGGCACCTGGAG
CGCGGTTTCACATAGAGAGCGCACAGGACCCTGACGTCGGTGCCAACTCAGTGCAGACCTACGAGCTCAG
CCCCAGCGAGCACTTTGAGCTGGATCTTAAACCCTTGCAGGAGAATAGCAAGGTGCTGGAGCTCGTGCTG
CGGAAGGGCCTAGACCGGGAGCAGACTGCCTTGCACTACTTGGTTCTCACTGCGGTGGATGGGGGCATCC
CAGCTCGCTCAGGCACAGCTCAGATCGCCGTTCGTGTCCTGGACACGAATGACAATTCTCCTGCCTTTGA
CCAATCCACTTACCGCGTCCAGCTGCGAGAGGATGCTCCTCCGGGCACATTGGTAGTGAAGTTGAATGCC
TCGGACCCGGATGAGGGTTCTAACGGTGAACTCAGGTACTCCTTGAGCAGCTACACATCAGACCGGGAGA
GACAGCTCTTCAGCATCGATGTGACTACAGGGGAAGTGAGAGTAAGTGGGACTCTGGATTATGAGGAGTC
TTCCTCCTACCAGATCTATGTGCAAGCTACTGACCGGGGACCGGTACCCATGGCGGGACACTGCAAGGTG
TTGGTGGACATTATAGATGTGAATGACAACGCTCCAGAGGTGGTGCTCACAGACTTATACAGCCCAGTGC
CTGAGGATGTTGCCCTCAACACTGTTGTGGCCCTTCTCAGTGTGAATGACCAAGATTCAGGCTCCAACAG
GAAAGTAAGCCTGGGTCTGGAGGCTTCACTGCCCTTCCGGCTGAATGGCTTTGGAAACTCCTATACCCTG
GTGGTGAGTGGCCCATTGGATCGGGAGCGGGTAGCTGCCTACAACATCACAGTGACAGCTACTGATGGGG
GAGTACCACCACTCACATCTCAAAGGACATTGCAGGTTGAGATCTCTGACATAAATGACAATCCACCAAG
CTTCCTGAAGGACTCCTATTCCATCTACATCGAGGAAAACAATTTACCAGGTGTGTTGCTCTGCACTGTG
CAAGCCACAGACCCAGATCAAAAGGAGAATGCAGAGGTGACCTACTCACTCCTAGACAGGGAGATTCAAG
GGCTGCCAGTCACCTCCTATGTCTCCATTAACAGTGCCAGCGGCAGCCTTTATGCTGTCAACTCCTTTGA
CTATGAGAAATTTCGAGAGTTTTTTGTGACTGTGGAGGCCCAGGATAAGGGGAGGCCACCACTAAGCAGC
ACTGTGACCGCCAACGTGTATGTGGTGGACGTGAATGACCACGCCCCCCATATTCTATACCCTACCTCAA
CTAATACATCAGCAGCCATTGAAATGGTGCCACGGACTGCCCCTGCTGGCTACCTGGTCACCAAAGTCAT
AGCCATGGATTCAGACTCTGGGCAGAATGCTTGGCTCTTTTACCATTTAGTCCCAACGTCTGACTCGGAC
CTTTTTAAAGTAGAACTTCACACAGGAGAAATTAGGATTACCAGGAAGATAGGAGATGAGAGTGGCACCA
CTTTCAACCTGACCGTGGTGGTCCGTGACAATGGAGAGCCACCTCTATCAGCTACCGTGGCCATCACAGT
AGCTGTGGTGGACAGGGTTTCTAAAATGCTCCCTGACACTCAGAGACATATAAAGAGTCCTCGGACATAC
TCTGAGATCACACTTTATCTGATAATAGCATTAAGCACAGTGTCTTTTATATTCCTTTTGACAATCATTG
TTCTGAGCATCATTAAGTGCTACCGCTACACTGCTTATGGCACGGCATGCTGTGGGGGCTTCTGTGGAGT
GAGGGAGCGCTGCCCTGCAGAGCTGTACAAGCAGGCCAATAACAATATCGATGCCAGGATACCACATGGC
CTCAAAGTACAGCCTCACTTCATTGAGGTTCGAGGCAATGGCTCCCTCACCAAGACCTACTGCTACAAGG
CCTGCCTGACAGCAGGCTCAGGGAGTGATACTTTCATGTTTTACAACACAGGGGCCCAGACAGGGCCAGG
GCCTGGGGGAGCCCAAGCCTCAGTGACTGACAACAGGCAACTCACCGGCCAAAGTAGGCACAGTACCGGG
AACCTGATTATCCTAAAAAATGATGCTGGCTCTCAAAATGAGCCCCGGCAGCCCAACCCTGACTGGCGCT
ACTCTGCCTCGCTAAGAGCAGGCATGCACAGCTCTGTGCACCTGGAGGAGGCTGGCATTCTACGGGCTGG
TCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCTGAGGCAGGAGAGGTG
TCCCCTCCGGTGGGCGCCGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAAC
AGTCCGGTCCCGGTGAGTTGCCAGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCA
GGAGCCTGCTAACAACCAAATTGACAAAAGCGATTTTATAACCTTCGGCAAAAAGGAGGAGACCAAGAAA
AAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACGGACAACA
GTGACCAGTGA

Translation (1006 aa):
MEQAGARPGATEHPRPLRPLPWLLLLSFRLLLVLLPGPAASQLRYSVPEEQSPGALVGNVARALGLELRR
LGPGCLRINHLGAPSPRYLELDLTNGALFVNERIDREALCEQRPRCLLSLEVLAHNPVAVSAIEVEILDI
NDNSPRFPRPDYQLQVSESVAPGARFHIESAQDPDVGANSVQTYELSPSEHFELDLKPLQENSKVLELVL
RKGLDREQTALHYLVLTAVDGGIPARSGTAQIAVRVLDTNDNSPAFDQSTYRVQLREDAPPGTLVVKLNA
SDPDEGSNGELRYSLSSYTSDRERQLFSIDVTTGEVRVSGTLDYEESSSYQIYVQATDRGPVPMAGHCKV
LVDIIDVNDNAPEVVLTDLYSPVPEDVALNTVVALLSVNDQDSGSNRKVSLGLEASLPFRLNGFGNSYTL
VVSGPLDRERVAAYNITVTATDGGVPPLTSQRTLQVEISDINDNPPSFLKDSYSIYIEENNLPGVLLCTV
QATDPDQKENAEVTYSLLDREIQGLPVTSYVSINSASGSLYAVNSFDYEKFREFFVTVEAQDKGRPPLSS
TVTANVYVVDVNDHAPHILYPTSTNTSAAIEMVPRTAPAGYLVTKVIAMDSDSGQNAWLFYHLVPTSDSD
LFKVELHTGEIRITRKIGDESGTTFNLTVVVRDNGEPPLSATVAITVAVVDRVSKMLPDTQRHIKSPRTY
SEITLYLIIALSTVSFIFLLTIIVLSIIKCYRYTAYGTACCGGFCGVRERCPAELYKQANNNIDARIPHG
LKVQPHFIEVRGNGSLTKTYCYKACLTAGSGSDTFMFYNTGAQTGPGPGGAQASVTDNRQLTGQSRHSTG
NLIILKNDAGSQNEPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEV
SPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPANNQIDKSDFITFGKKEETKK
KKKKKKGNKTQEKKEKGNSTTDNSDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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