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Report for CCDS51657.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51657.1 Public Mus musculus 5 Gtf2ird1 23 108 98 CCDS HistoryNCBI Gene:57080Re-query CCDS DB by CCDS ID:51657.1Re-query CCDS DB by GeneID:57080See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51657.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074114.11 ENSMUSP00000073752.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074114.11Link to Ensembl Protein Viewer:ENSMUSP00000073752.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000074114Re-query CCDS DB by Protein ID:ENSMUSP00000073752
Original member Current member NCBI NM_001081467.2 NP_001074936.1 Accepted alive Link to Nucleotide Sequence:NM_001081467.2Link to Protein Sequence:NP_001074936.1Re-query CCDS DB by Nucleotide ID:NM_001081467Re-query CCDS DB by Protein ID:NP_001074936Link to BLAST:NP_001074936.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074936.1 1001 Q9JI57-8 1001 100% 0 0

Chromosomal Locations for CCDS 51657.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 134358823 134359118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134360238 134360275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134363182 134363374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134363902 134363979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134366836 134366916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134376107 134376135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134376894 134377077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134379937 134380020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134382530 134382586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134382781 134382830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134383740 134383923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134385019 134385084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134385790 134385837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134388434 134388523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134389131 134389211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134389674 134389711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134390822 134390930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134392395 134392420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134395617 134395800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134402111 134402194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134403732 134403821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134404656 134404966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134409127 134409310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134410954 134411109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134415135 134415276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134417053 134417175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3006 nt):
ATGGCCTTGCTGGGGAAGCACTGTGACATCCCCACCAACGGCTGTGGGTCTGAGCGCTGGAACTCCACCT
TC
GCCCGCAAGGACGAACTCATCAACAGTCTGGTGTCCGCCTTAGACTCCATGTGCTCGGCGCTCTCCAA
G
CTGAACACGGAGGTGGCCTGCGTGGCGGTACACAATGAGAGCGTCTTCGTGATGGGCACCGAGAAGGGA
AGG
GTGTTTCTGAACACTCGGAAGGAGCTACAGTCAGACTTCCTCAGGTTCTGCCGGGGACCCCTGTGGA
AC
GATCCAGAAGCAGGACACCCTAAAAAGGTGCAGCGCTGTGAAGGCGGTGGCCGGAGCCTCCCGCGGTC
C
TCTCTGGAGCAGTGCTCGGATGTGTACCTGCTGCAGAAGATGGTAGAGGAAGTGTTTGATGTTCTTTAT
A
GT
GAGGCTATGGGCAGGGCCACCGTGGTACCTTTGCCCTATGAGAGGCTGCTCAGGGAGCCGGGGCTAC
TG
GCGGTGCAGGGGCTGCCCGAGGGCCTGGCCTTCCGGAGGCCAGCAGAGTATGACCCCAAGGCACTCAT
G
GCCATATTGGAGCACAGTCACCGAATTCGGTTTAAGCTCAGGAGGCCTCCTGATGACGGTGGGCAGGAC
ACG
AAGGCGCTGGTGGAGATGAACGGTATCTCTCTGCTACCCAAGGGGTCCCGAGACTGTGGTCTGCATG
GC
CAGGCCTCCAAGGTCGCTCCCCAAGACCTGACCCCCACCGCCACCCCATCCTCTATGGCCAACTTCCT
G
TACAGCACTTCGATGCCCAACCACACGATCCGGGAACTCAAGCAGGAGGTGCCAACCTGCCCGTTGACC
CCC
AGCGACCTGGGCATGGGCTGGCCCGTGCCTGAGCCCCATGTCCCCAGCACCCAAGATTTCTCTGATT
GC
TGTGGACAGACGCCTGCAGGGCCTGCTGGGCCTCTCATCCAGAATGTCCATGCTTCCAAGCGCATCCT
C
TTCTCCATCGTCCATGACAAGTCAGAGAAGTGGGATCCCTTCATCAAGGAAATGGAGGACATCAATACC
CTG
CGGGAGTGCGTGCAGATTCTGTTTAACAGCAGATACGCGGAAGCCCTGGGCCTGGACCACATGGTCC
CT
GTGCCCTATAGGAAGATTGCCTGTGACCCCGAGGCTGTGGAAATTGTGGGTATTCCAGACAAGATCCC
C
TTCAAGCGACCCTGTACTTACGGAGTGCCGAAGCTGAAGAGGATTCTGGAGGAGCGACACAGCATTCAC
TTC
ATTATCAAGAGAATGTTCGATGAGCGCATTTTCACAGGGAACAAGTTTACCAAAGACCCCATGAAGC
TG
GAGCCAGCTAGCCCACCAGAAGACACTTCCACAGAAGTCTGTAGGGACAGCATGCTGGACCTGGCTGG
G
ACTGCTTGGTCAGACATGAGCAGCGTCTCTGAAGACTGTGGGCCAGGAACCTCAGGAGAGATAGCAATG
TTG
AGGCCTATCAAAATCGAGCCAGAGGAGCTGGACATTATTCAGGTTACGGTCTCAGATCCTTCACCTA
CC
TCTGAGGAGATGACTGACTCGTTACCTGGGCATCTGCCCTCAGAGGATTCCGGTTATGGGATGGAAAT
G
CCGGCTGACAAAGGCCCCAGTGAAGAACCGTGGTCAGAAGAGAGGCCGGCCGAAGAGAGCCCTGGTGAC
GTG
ATCCGGCCCCTACGGAAGCAGGTGGAGATGCTGTTCAACACGAAATATGCCAAAGCTATTGGTACCT
CA
GAGCCGGTCAAGGTGCCCTACTCCAAGTTCCTGATGCACCCGGAGGAGCTGTTCGTACTGGGACTGCC
T
GAAGGCATCTCTCTTCGGAGACCCAACTGCTTTGGGATTGCAAAGCTGCGGAAGATTCTGGAAGCGAGC
AAC
AGCATCCAGTTTGTCATCAAGAGACCCGAACTGCTCACTGACGGTGTCAAAGAACCTGTTCTGGACA
CT
CAAGAGAGGGACTCCTGGGACCGTCTTGTGGACGAGACCCCGAAGAGACAGGGCCTTCAAGAAAATTA
C
AACACCAGACTCTCGCGGATCGACATCGCCAACACGCTTAGGGAACAAGTCCAAGACCTGTTTAACAAG
AAA
TACGGTGAAGCTCTGGGCATCAAATACCCAGTGCAGGTGCCCTACAAGAGAATCAAAAGCAACCCAG
GC
TCGGTAATCATTGAAGGCCTACCCCCCGGGATCCCATTCCGCAAACCCTGCACCTTTGGCTCCCAGAA
C
CTGGAAAGGATTCTCTCTGTGGCTGACAAGATCAAGTTCACGGTCACCAGGCCATTCCAAGGACTTATC
CCA
AAGCCTGAAACCAAAATTCTCACTACAGGACATGAAGCTGGGAAAACCACCAGACCAAGGAGACTGC
AA
CAGGACACCTGGCAGCCAGATGAGGATGATGCCAACAGACTGGGGGAGAAGGTGATCCTCCGAGAGCA
G
GTGAAGGAGCTCTTCAATGAGAAATACGGTGAGGCCCTGGGACTGAATCGGCCTGTGCTGGTCCCTTAC
AAA
CTGATCCGGGACAGCCCAGATGCCGTGGAGGTGAAGGGCCTCCCAGATGACATCCCCTTCCGGAACC
CC
AACACCTATGACATCCATCGGCTGGAGAAGATCCTGAAGGCCAGGGAGCATGTGCGGATGGTCATCAT
C
AACCAGCTCCAACCTTTTGGGGACGTCTGCAACAATGCCAAGGTGCCAGCCAAAGACAACATTCCCAAG
CGC
AAGAGAAAGAGGGTCTCTGAAGGCAACTCAGTCTCCTCTTCTTCCTCCTCTTCATCTTCGTCCTCTA
AC
CCAGAGTCTGTGGCATCCACCAACCAGATCTCCCTCGTGGTAAAGTCACGCGGATCCGAACTTCACCC
T
AATTCTGTGTGGCCTTTGCCCCTTCCTCGGGCAGGGCCATCCACAGCTCCAGGAACTGGGAGGCACTGG
GCT
CTGAGAGGGACTCAGCCAACCACAGAGGGGCAGGCACATCCACTCGTTTTGCCCACAAGATAG


Translation (1001 aa):
MALLGKHCDIPTNGCGSERWNSTFARKDELINSLVSALDSMCSALSKLNTEVACVAVHNESVFVMGTEKG
R
VFLNTRKELQSDFLRFC
RGPLWNDPEAGHPKKVQRCEGGGRSLPRSSLEQCSDVYLLQKMVEEVFDVLY
S
EAMGRATVVPLPYERLLREPGLLAVQGLPEGLAFRRPAEYDPKALMAILEHSHRIRFKLRRPPDDGGQD
T
KALVEMNGISLLPKGSRDCGLHGQASKVAPQDLTPTATPSSMANFLYSTSMPNHTIRELKQEVPTCPLT
P
SDLGMGWPVPEPHVPSTQDFSDCC
GQTPAGPAGPLIQNVHASKRILFSIVHDKSEKWDPFIKEMEDINT
L
RECVQILFNSRY
AEALGLDHMVPVPYRKIACDPEAVEIVGIPDKIPFKRPCTYGVPKLKRILEERHSIH
F
IIK
RMFDERIFTGNKFTKDPMKLEPASPPEDTSTEVCRDSMLDLAGTAWSDMSSVSEDCGPGTSGEIAM
L
RPIKIEPEELDIIQVTVS
DPSPTSEEMTDSLPGHLPSEDSGYGMEMPADKGPSEEPWSEERPAEESPGD
V
IRPLRKQVEMLFNTKY
AKAIGTSEPVKVPYSKFLMHPEELFVLGLPEGISLRRPNCFGIAKLRKILEAS
N
SIQFVIK
RPELLTDGVKEPVLDTQERDSWDRLVDETPKRQGLQENYNTRLSRIDIANTLREQVQDLFNK
K
Y
GEALGIKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKPCTFGSQNLERILSVADKIKFTVTRPFQGLI
P
KP
ETKILTTGHEAGKTTRPRRLQQDTWQPDEDDANRLGEKVILREQVKELFNEKYGEALGLNRPVLVPY
K
LIRDSPDAVEVKGLPDDIPFRNPNTYDIHRLEKILKAREHVRMVIINQL
QPFGDVCNNAKVPAKDNIPK
R
KRKRVSEGNSVSSSSSSSSSSSNPESVASTNQISLVVKSRGSELHPNSVWPLPLPRAGPSTAPGTGRHW
A
LRGTQPTTEGQAHPLVLPTR




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser