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Report for CCDS28198.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28198.2 Public Mus musculus 16 Slc9c1 23 108 98 CCDS HistoryNCBI Gene:208169Re-query CCDS DB by CCDS ID:28198.2Re-query CCDS DB by GeneID:208169See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 28198.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 28198.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159945.7 ENSMUSP00000124969.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159945.7Link to Ensembl Protein Viewer:ENSMUSP00000124969.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159945Re-query CCDS DB by Protein ID:ENSMUSP00000124969
Original member Current member NCBI NM_198106.4 NP_932774.3 Accepted alive Link to Nucleotide Sequence:NM_198106.4Link to Protein Sequence:NP_932774.3Re-query CCDS DB by Nucleotide ID:NM_198106Re-query CCDS DB by Protein ID:NP_932774Link to BLAST:NP_932774.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932774.3 1175 Q6UJY2 1175 100% 0 0

Chromosomal Locations for CCDS 28198.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 45539585 45539738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45541376 45541476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45543128 45543256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45544690 45544855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45547600 45547725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45550074 45550235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45552899 45552998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45554212 45554355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45555635 45555809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45556586 45556667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45558142 45558308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45560219 45560344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45573328 45573425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45575318 45575437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45577724 45577919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45580075 45580260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45581484 45581633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45582954 45583005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45584341 45584489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45589502 45589627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45590791 45590889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45593319 45593492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45599451 45599582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45599698 45599883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45601874 45602000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45605139 45605194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45606817 45606861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3528 nt):
ATGGAAATGGAAGAAATTTCTGAAAATTTAACTGCATCCCACAGTATCAAACTGACTAATATGTGGCTGG
AACTTCTCAAAAGTGTGTTTCTGAGCACTCCCCAGGACCTCCCTGAAATCATCCTGATACTATCTTTGAT
CTGTACAGTTGGAGCATTTTTGAACATGCATCTGAAAGATTTTCCAATTCCTCTTCCTGTGATACTATTT
TTAATTGGATGCTGTTTTGAAATTCTGAGTTTTGCATCAACCCAGATCCAGATATATGCAGATGCCATAC
AGTGGATGGATCCAGACATATTCTTTGGTATATTCACACCAGTGATTATCTTTAATGTTGCCTTCGACAT
GGATATATACATGCTTCAAAAGTTATTTTGGCAGATACTAGTAATTACAATTCCTGGATTTCTGATTAAT
TACACCTTAATACTTTGGTATCTGCAGTCTGTGAATAAATTATCTTTGAAGACTGTCCCCTGGTTACTAT
TTTCAGCTGTTCTTATAAGTTCAGATCCTATGCTTACTTCAGCCTCCATAAGAGACCTTGGTCTTTCTAG
AAGCCTCACAAATTTAATTAATGGAGAGAGTCTACTGACCTCAGTGTTATCCTTAGTTATATATAGTGGT
GTTGTGCATATCAGATTCAAGTCAAAGAGTGTGAACCACACCCTAGCCCACAAGGTCATGTCTACAGCTT
GGTCGTATATTGTTGAAAGCTTCATTACTGGAATCGTATTTACAAAAGTGATTCAGTTATGGATGGCCAC
CATCTTTGGTGATGATGTCAACCACATCACTCTCATCTTCTCAGTTTTATACCTCATCTTCTATGTTTGT
GAACTAGTTGGAATGTCTGGAATATTTACTCTGGCCACCATAGGACTTTTTCTAAATTCTACAAGCTTTA
AACCAGGAGTTGAAGCATTTCTGCTCGAATTCTGGAACTGCCTGTCTTTTATTGGTTTTCTTATGGTGTT
CACTTTCATTGGACTTCTAATCCCTGCACACACATACTTACATATATCATTTTCTGATGTATATTATTCA
TTAAATATCTACTTCACACTGATTGTTTTAAGACTTTTGGTCTTTCTGCTAATGAGCCCCATCTTGTCTC
GACTTGGTCACGGGTTCAGCTGGCGCTGGGCGTTCATCATGGTCTGGAGTGAAATGAAAGGAACACCGAA
CATAAATATGGCGCTCCTGCTTGCCTACTCGGACATTTCTCTCGGTTCTGAGAGGGAAAGATCTCAAATA
CTATTTCATGGAGTGTCAGTATGTGTAATTACCCTGATTGTCAATAGATTTATTTTGCCAATGGCAGTTA
CTAAACTAGGTCTTCGTGATGTCACATCAACAAAATATAAATCGGTTTATTATACATTCCAACACTTTCA
AGAGCTAACCAAATCTACAGCCATGGCACTCAAATTTGACAAAGATCTTGCTAATGCTGACTGGAACATG
GTTGACAATGCAATTATACTTCAAAATCCATATGCAATGAACCAAGAAGAAATAACAGAGCATCAGAAGG
TGAAATGTCCAGATTGCAACAAGGAAATAGATGAGACCCTCAACATTGAAGCCATGGAGCTGACCAACAG
ACGTCTCCTGTCAGCACAGATAGCGAGCTACCAACGACAGTACAGGAATGAGGTTCTGTCCCAGAGTGCA
GTGCAGGTGTTGGTAGGCGCAGCTGGAAGCTTTGGTGAGAAGAAGGGAGAATATATGAGTCCTGAGAATA
TAAAGAATTTTTCAGAAAGCAAAAAACTCCTCTCCTTTCTTAGAAAATTACTACTCAACTGGGTGTATAA
TACTAAAAAAGATAAAGGGGTTCCATCAAGATACATGTTTCTTCATGCATGCCATAGAATAGTCTTCACA
AATGAATTTGAATATACTGGATACCTTGTGGTATTAATGAGCACATATCCTATGATAATCTGTTGGATTT
CCCGACTAAAAGACATCTATGACAACGAGATAAAGTGTGCTAACTACTATTTTCTTGCCTTCTATATTCT
AGAGGCTCTACTTAAGGTGGCAGCAATGAGGAAGGAATTTTTTTCACACACCTGGCTCCTGTTTGAGCTG
GGGATTACCTTAGTCGGCGTCCTAGATATAATACTTATCGAAACAGACTCCATTAGTTACAATTTTGACT
TAACTGAGACTGTGGTCTTCATGAACGTGATTCGACTCCTTCGTATACTGCGCATCTTGAAGCTTGTAAC
ACCAAAACTGCTGCAAATCATAGACAAAAGGATGAGCCAGCAGATATCATTTCGGTATTCTATACTGAAA
GGCTATGTCCAAGGGGAAATGGATGTACTGAATATAATTGATCAGATTGCAAGTTCCAAACAGACTAAAC
AGATATTGTTAAAGCGGGTAATGAGGAATATGGAACATGCTATGAAAGAGCTAGGCTACTTAGAGTATGA
CCATCCGGAAATCGCTGTCACTATGAAAACCAAGGAGGAGATTAATGTCATGCTCAATATGGCCAGAGAA
ATTGTCAAGGCTTTCAGGTCCAAAGGAATTATACACAAGGTGGAAGGCACTGAGATTAACAAGTTAATCA
TGGCCAAAAAGATCCAGGTGCTTGATCTGCAGTCTGTTATCCAGCCATTTAATGTTGAAGAAGCCCCGTG
CAATATCCCATGGCTTAGTGAAGATCCTGAAGCCATAACCTTTATTCAGGAAAAAGCAAAAGTTGTAACA
TTTGACTGTGGAAATAACATATTTGAAGAAGGTGATGAGCCAGAAGGAATCTATGTAATAATTTCAGGCA
TGGTTAAGCTTAAAAGGTCAAAACCACACCTGGAGATGGAAAGAGTATCCGCAGAGTCAGAGATTAAAAT
TCATCCACTGCCCCACACAGAGTACCTGCTCAGCGGGGAGATAATAGGAGAGTTAAACTGTCTGACTAAA
GAACGGATGCAATATTCTGCCACCTGCAAAACTGTTGTGGAGACATATTTTATTCCCATTAGCCACTTGT
ATGAAGGCTTTGAAAAAAGATGTCCTAACATGAAACATAAAATGTGGCAAAAAATCGGACTTGCCATTAC
TGCCCAAAAGATCCGAGAACACTTATCTTTTGAGGACTGGAACTACAAGCTGCAGTTGAAACTCTGCAAT
GCCTTCATAAGAGACATCCCCAAGTCCATGAAAACTGACATCTATGACGAAACGGTAACCCACGTTGTCC
TCATCCATGGATCTGCTGAGGACTGCCAGCTGCGAAAAATTTATAAGGCGCCTTTCCTAATTCCTGTGAC
GTGCCATCAGATACAAGGCATGGAAGACTTCACAAAAGTGATGATTATTCAAACTTCAATTGCTGTAAGA
AAATTCAGATGGAATGTAAGAAAGTACATCCCACCTCGAAGAATTTCGATGAAACCAGATTCTGAAAGAG
AATCTTTTGAAACATTGGATGAAACCTCTGAAGAGGACAATGGTAAGAAAGAGAATCAAGAAAATGAGGA
ATTGATAGAAGAGAATATTAACATCTAA

Translation (1175 aa):
MEMEEISENLTASHSIKLTNMWLELLKSVFLSTPQDLPEIILILSLICTVGAFLNMHLKDFPIPLPVILF
LIGCCFEILSFASTQIQIYADAIQWMDPDIFFGIFTPVIIFNVAFDMDIYMLQKLFWQILVITIPGFLIN
YTLILWYLQSVNKLSLKTVPWLLFSAVLISSDPMLTSASIRDLGLSRSLTNLINGESLLTSVLSLVIYSG
VVHIRFKSKSVNHTLAHKVMSTAWSYIVESFITGIVFTKVIQLWMATIFGDDVNHITLIFSVLYLIFYVC
ELVGMSGIFTLATIGLFLNSTSFKPGVEAFLLEFWNCLSFIGFLMVFTFIGLLIPAHTYLHISFSDVYYS
LNIYFTLIVLRLLVFLLMSPILSRLGHGFSWRWAFIMVWSEMKGTPNINMALLLAYSDISLGSERERSQI
LFHGVSVCVITLIVNRFILPMAVTKLGLRDVTSTKYKSVYYTFQHFQELTKSTAMALKFDKDLANADWNM
VDNAIILQNPYAMNQEEITEHQKVKCPDCNKEIDETLNIEAMELTNRRLLSAQIASYQRQYRNEVLSQSA
VQVLVGAAGSFGEKKGEYMSPENIKNFSESKKLLSFLRKLLLNWVYNTKKDKGVPSRYMFLHACHRIVFT
NEFEYTGYLVVLMSTYPMIICWISRLKDIYDNEIKCANYYFLAFYILEALLKVAAMRKEFFSHTWLLFEL
GITLVGVLDIILIETDSISYNFDLTETVVFMNVIRLLRILRILKLVTPKLLQIIDKRMSQQISFRYSILK
GYVQGEMDVLNIIDQIASSKQTKQILLKRVMRNMEHAMKELGYLEYDHPEIAVTMKTKEEINVMLNMARE
IVKAFRSKGIIHKVEGTEINKLIMAKKIQVLDLQSVIQPFNVEEAPCNIPWLSEDPEAITFIQEKAKVVT
FDCGNNIFEEGDEPEGIYVIISGMVKLKRSKPHLEMERVSAESEIKIHPLPHTEYLLSGEIIGELNCLTK
ERMQYSATCKTVVETYFIPISHLYEGFEKRCPNMKHKMWQKIGLAITAQKIREHLSFEDWNYKLQLKLCN
AFIRDIPKSMKTDIYDETVTHVVLIHGSAEDCQLRKIYKAPFLIPVTCHQIQGMEDFTKVMIIQTSIAVR
KFRWNVRKYIPPRRISMKPDSERESFETLDETSEEDNGKKENQENEELIEENINI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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