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Report for CCDS57361.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57361.1 Public Mus musculus 5 Pramel42 23 108 98 CCDS HistoryNCBI Gene:100041102Re-query CCDS DB by CCDS ID:57361.1Re-query CCDS DB by GeneID:100041102See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57361.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178330.1 ENSMUSP00000137485.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178330.1Link to Ensembl Protein Viewer:ENSMUSP00000137485.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178330Re-query CCDS DB by Protein ID:ENSMUSP00000137485
Original member Current member EBI ENSMUST00000202642.3 ENSMUSP00000144005.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202642.3Link to Ensembl Protein Viewer:ENSMUSP00000144005.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202642Re-query CCDS DB by Protein ID:ENSMUSP00000144005
Original member Current member NCBI NM_001243937.1 NP_001230866.1 Accepted alive Link to Nucleotide Sequence:NM_001243937.1Link to Protein Sequence:NP_001230866.1Re-query CCDS DB by Nucleotide ID:NM_001243937Re-query CCDS DB by Protein ID:NP_001230866Link to BLAST:NP_001230866.1
Original member Current member NCBI NM_001243938.1 NP_001230867.1 Accepted alive Link to Nucleotide Sequence:NM_001243938.1Link to Protein Sequence:NP_001230867.1Re-query CCDS DB by Nucleotide ID:NM_001243938Re-query CCDS DB by Protein ID:NP_001230867Link to BLAST:NP_001230867.1

Chromosomal Locations for CCDS 57361.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 94534849 94535135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94535800 94536390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94537361 94537928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGAGTGGTCAGACCCCACCCACACTCCAGAAGCGAGCAAGGCAGACACAGCTGAGAGATGAGGCTTTGG
CC
ATATCCCCTCTGGAGAACGTGCCAGCTGTGTACGTCCCATGGCTGTTCCAAGAGGCCTTTGCTGGCAG
A
CACAACTCGCTCATAAAGACAATGGTGGCAGCCTGGCCTTTCCAATATCTCCCTGTGGGGTCATTGATA
AAT
ATGCATAACCTGGAAACCTTGCAAGCTCTGCTAGATGGTGTAGACAGGAGACTGACAAGAAAATTTC
CC
CCCGGGAGGCCAAAACTTCAGGTTCTCGACATGAGAAATGTGCACCATGTCTTCTGGAACATAGGGAG
C
GATGCAAATGACAGTGACTCTGATGCAGAGACCTTGGATGAAAAGCAAGTAGTGAAGGCCCTTCCCAGA
TAT
GCACTGAGGCAGCGTCTGAAGATCATAGTTGATCTGTCAATCAGTTCTCAGCTCAATGAAGAAAAAG
CA
TATTTCTTGAATTGGGCCAAGCAGAGAAAGGGGTCCATAAATTTCTGCTGTACAAAGATGAAGATCTG
G
GATGCACCAGACAAAGTTATCAGAGAAATCATGAATGTTTTTCATCCAGAGCACATTACAGAATTAGAA
CTG
TATACCGACTGGACTCTGTTGCGGCTGGCACATTTTGCTCCCTACTTTGGGCAGATGAAAAATCTTG
AA
AAAGTCTTCCTGGCACCACTCCACAAGAATACCTCCCCTATTATGAATATAACAGGGGCCTCAAAAGT
C
AAGTGTATCAAAAAGATTATTTCTCAGTTTTCCAAATTCAACTGTCTCCAACATGTCTTCATGAAACGT
GTC
CATTTTCTCAGAGACCACCTGCATCAGATCCTAGGGTGCCTGAGGACGCCCTTGCAGACCCTCTCCA
TC
ACTCACTGCCTAATTTCACAGACAGACTTGGATTCCTTTTCCTGCTGTCACAACCTTTTTAAGTTAAA
A
AATCTGGAAATCAGAGGAGTGACACTATTTGCTCTCGATCTTATGCCTCTGAGAGGTCTCCTAGGAAAA
CTG
GCAGGTACTCTTAAGTCTCTGGATTTTCAGTGGTGTAGCATGAAGGACTCCCAGCTCATTGTCCTCT
TA
CCTGCCCTCAGTCAATGCTCTCAGCTCAACCAGATCAACTTCTACAGCAATGACTTCTCCATGGCCAT
C
CTGAAGGACCTTTTGCAGCACACAGCCACCTGGAGCAAGATGAATGTGGAACAATACCCTGTCCCTCTG
GAG
TGCTATGATGCATTGGGTAATGTCTCCAGAGAAAGATTTGTGGAACTTTGTCAGGAGCTCATGGATA
CC
CTCAGGGCCAAAAGAGAGCCTAAGAGCATATCTTTTGCAACAAATGTCTGCCAAAACTGTGGCAAGAC
C
TGTGTCTATGGCCAGGGGGCAAGGCTTTGTTCCTGTTTGCAGTAA


Translation (481 aa):
MSGQTPPTLQKRARQTQLRDEALAISPLENVPAVYVPWLFQEAFAGRHNSLIKTMVAAWPFQYLPVGSLI
N
MHNLETLQALLDGVDRRLTRKFPP
GRPKLQVLDMRNVHHVFWNIGSDANDSDSDAETLDEKQVVKALPR
Y
ALRQRLKIIVDLSISSQLNEEKAYFLNWAKQRKGSINFCCTKMKIWDAPDKVIREIMNVFHPEHITELE
L
YTDWTLLRLAHFAPYFGQMKNLEKVFLAPLHKNTSPIMNITGASKVKCIKKIISQFSKFNCLQHVFMKR
V
HFLRDHLHQIL
GCLRTPLQTLSITHCLISQTDLDSFSCCHNLFKLKNLEIRGVTLFALDLMPLRGLLGK
L
AGTLKSLDFQWCSMKDSQLIVLLPALSQCSQLNQINFYSNDFSMAILKDLLQHTATWSKMNVEQYPVPL
E
CYDALGNVSRERFVELCQELMDTLRAKREPKSISFATNVCQNCGKTCVYGQGARLCSCLQ




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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