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Report for CCDS12650.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12650.1 Public Homo sapiens 19 APOC2 24 110 108 CCDS HistoryNCBI Gene:344Re-query CCDS DB by CCDS ID:12650.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12650.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252490.7 ENSP00000252490.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000252490.7Link to Ensembl Protein Viewer:ENSP00000252490.5Re-query CCDS DB by Nucleotide ID:ENST00000252490Re-query CCDS DB by Protein ID:ENSP00000252490
Original member Current member EBI ENST00000590360.2 ENSP00000466775.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000590360.2Link to Ensembl Protein Viewer:ENSP00000466775.1Re-query CCDS DB by Nucleotide ID:ENST00000590360Re-query CCDS DB by Protein ID:ENSP00000466775
Original member Current member NCBI NM_000483.5 NP_000474.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000483.5Link to Protein Sequence:NP_000474.2Re-query CCDS DB by Nucleotide ID:NM_000483Re-query CCDS DB by Protein ID:NP_000474Link to BLAST:NP_000474.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000474.2 101 P02655 101 100% 0 0

Chromosomal Locations for CCDS 12650.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 44948479 44948533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44948701 44948860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44949159 44949249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (306 nt):
ATGGGCACACGACTCCTCCCAGCTCTGTTTCTTGTCCTCCTGGTATTGGGATTTGAGGTCCAGGGGACCC
AACAGCCCCAGCAAGATGAGATGCCTAGCCCGACCTTCCTCACCCAGGTGAAGGAATCTCTCTCCAGTTA
CTGGGAGTCAGCAAAGACAGCCGCCCAGAACCTGTACGAGAAGACATACCTGCCCGCTGTAGATGAGAAA
CTCAGGGACTTGTACAGCAAAAGCACAGCAGCCATGAGCACTTACACAGGCATTTTTACTGACCAAGTTC
TTTCTGTGCTGAAGGGAGAGGAGTAA

Translation (101 aa):
MGTRLLPALFLVLLVLGFEVQGTQQPQQDEMPSPTFLTQVKESLSSYWESAKTAAQNLYEKTYLPAVDEK
LRDLYSKSTAAMSTYTGIFTDQVLSVLKGEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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