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Report for CCDS38086.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38086.1 Public Mus musculus 2 Cacfd1 23 108 98 CCDS HistoryNCBI Gene:381356Re-query CCDS DB by CCDS ID:38086.1Re-query CCDS DB by GeneID:381356See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38086.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114006.7 ENSMUSP00000109639.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114006.7Link to Ensembl Protein Viewer:ENSMUSP00000109639.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114006Re-query CCDS DB by Protein ID:ENSMUSP00000109639
Original member Current member EBI ENSMUST00000114007.7 ENSMUSP00000109640.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114007.7Link to Ensembl Protein Viewer:ENSMUSP00000109640.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114007Re-query CCDS DB by Protein ID:ENSMUSP00000109640
Original member Current member NCBI NM_029862.4 NP_084138.1 Accepted alive Link to Nucleotide Sequence:NM_029862.4Link to Protein Sequence:NP_084138.1Re-query CCDS DB by Nucleotide ID:NM_029862Re-query CCDS DB by Protein ID:NP_084138Link to BLAST:NP_084138.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084138.1 171 Q8BG21-1 171 100% 0 0

Chromosomal Locations for CCDS 38086.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27009988 27010105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27014093 27014165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27015484 27015609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27018373 27018480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27018888 27018978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (516 nt):
ATGAGCGGCTCGGGCGCCGCCGGAGCGGCCGCGGGCCCAGCCCCGCCGGCACAGGAAGAGGGCATGACTT
GGTGGTACCGCTGGCTGTGCCGCCTGGCGGGAGTGCTAGGAGCGGTGTCCTGTGCCATCTCTGGACTCTT
CAACTGCGTCACTATCCACCCTCTGAACATCGCAGCTGGCGTGTGGATGATCATGAACGCCTTCATCCTG
TTGTTGTGCGAGGCTCCCTTCTGCTGCCAGTTTGTGGAGTTTGCAAACACAGTAGCTGAGAAGGTTGACC
GGCTGCGCTCCTGGCAGAAGGCTGTCTTCTACTGCGGGATGGCCATCGTCCCCATCGTCATGAGCCTCAC
CCTGACTACACTGCTGGGCAATGCCATCGCCTTTGCCACGGGGGTGCTGTATGGACTGTCTGCCCTGGGC
AAAAAGGGCGATGCCATTTCTTATGCTCGGATCCAGCAGCAGAGACAGCAGGCAGATGAGGAGAAGCTGG
CGGAGACTTTCGAGGGGGAACTGTGA

Translation (171 aa):
MSGSGAAGAAAGPAPPAQEEGMTWWYRWLCRLAGVLGAVSCAISGLFNCVTIHPLNIAAGVWMIMNAFIL
LLCEAPFCCQFVEFANTVAEKVDRLRSWQKAVFYCGMAIVPIVMSLTLTTLLGNAIAFATGVLYGLSALG
KKGDAISYARIQQQRQQADEEKLAETFEGEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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