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Report for CCDS58493.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58493.1 Public Homo sapiens 16 DEF8 24 110 108 CCDS HistoryNCBI Gene:54849Re-query CCDS DB by CCDS ID:58493.1Re-query CCDS DB by GeneID:54849See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58493.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000569453.5 ENSP00000456501.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000569453.5Link to Ensembl Protein Viewer:ENSP00000456501.1Re-query CCDS DB by Nucleotide ID:ENST00000569453Re-query CCDS DB by Protein ID:ENSP00000456501
Original member Current member EBI ENST00000563594.6 ENSP00000458019.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000563594.6Link to Ensembl Protein Viewer:ENSP00000458019.1Re-query CCDS DB by Nucleotide ID:ENST00000563594Re-query CCDS DB by Protein ID:ENSP00000458019
Original member Current member EBI ENST00000617948.4 ENSP00000482524.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000617948.4Link to Ensembl Protein Viewer:ENSP00000482524.1Re-query CCDS DB by Nucleotide ID:ENST00000617948Re-query CCDS DB by Protein ID:ENSP00000482524
Original member Current member NCBI NM_001242818.2 NP_001229747.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001242818.2Link to Protein Sequence:NP_001229747.1Re-query CCDS DB by Nucleotide ID:NM_001242818Re-query CCDS DB by Protein ID:NP_001229747Link to BLAST:NP_001229747.1
Original member Current member NCBI NM_001242820.2 NP_001229749.1 Accepted alive Link to Nucleotide Sequence:NM_001242820.2Link to Protein Sequence:NP_001229749.1Re-query CCDS DB by Nucleotide ID:NM_001242820Re-query CCDS DB by Protein ID:NP_001229749Link to BLAST:NP_001229749.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229747.1 451 Q6ZN54-5 451 100% 0 0
NP_001229749.1 451 Q6ZN54-5 451 100% 0 0

Chromosomal Locations for CCDS 58493.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 89954253 89954376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89955169 89955266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89957511 89957660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89959014 89959155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89960931 89961095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89961737 89961864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89962012 89962125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89963363 89963443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89964170 89964310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89964466 89964575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89965861 89965963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGGAATATGATGAGAAGCTGGCCCGTTTCCGGCAGGCCCACCTCAACCCCTTCAACAAGCAGTCTGGGC
CGAGACAGCATGAGCAGGGCCCTGGGGAGGAGGTCCCGGACGTCACTCCTGAAGAGGCCCTGCCTGAGCT
GCCCCCTGGGGAGCCGGAATTCCGCTGCCCTGAACGCGTGATGGATCTCGGCCTGTCTGAGGACCACTTC
TCCCGCCCTGTGGGTCTGTTCCTGGCCTCTGACGTCCAGCAGCTGCGGCAGGCGATCGAGGAGTGCAAGC
AGGTGATTCTGGAGCTGCCCGAGCAGTCGGAGAAGCAGAAGGATGCCGTGGTGCGACTCATCCACCTCCG
GCTGAAGCTCCAGGAGCTGAAGGACCCCAATGAGGATGAGCCAAACATCCGAGTGCTCCTTGAGCACCGC
TTTTACAAGGAGAAGAGCAAGAGCGTCAAGCAGACCTGTGACAAGTGTAACACCATCATCTGGGGGCTCA
TTCAGACCTGGTACACCTGCACAGGGTGTTATTACCGCTGTCACAGTAAGTGCTTGAACCTCATCTCCAA
GCCCTGTGTGAGCTCCAAAGTCAGCCACCAAGCTGAATACGAACTGAACATCTGCCCTGAGACAGGGCTG
GACAGCCAGGATTACCGCTGTGCCGAGTGCCGGGCGCCCATCTCTCTGCGGGGTGTGCCCAGTGAGGCCA
GGCAGTGCGACTACACCGGCCAGTACTACTGCAGCCACTGCCACTGGAACGACCTGGCTGTGATCCCTGC
ACGCGTTGTACACAACTGGGACTTTGAGCCTCGAAAGGTTTCTCGCTGCAGCATGCGCTACCTGGCGCTG
ATGGTGTCTCGGCCCGTACTCAGGCTCCGGGAGATCAACCCTCTGCTGTTCAGCTACGTGGAGGAGCTGG
TGGAGATTCGCAAGCTGCGCCAGGACATCCTGCTCATGAAGCCGTACTTCATCACCTGCAGGGAGGCCAT
GGAGGCTCGTCTGCTGCTGCAGCTCCAGGATCGGCAGCATTTTGTGGAGAACGACGAGATGTACTCTGTC
CAGGACCTCCTGGACGTGCATGCCGGCCGCCTGGGCTGCTCGCTCACCGAGATCCACACGCTCTTCGCCA
AGCACATCAAGCTGGACTGCGAGCGGTGCCAGGCCAAGGGCTTCGTGTGTGAGCTCTGCAGAGAGGGCGA
CGTGCTGTTCCCGTTCGACAGCCACACGTCTGTGTGCGCCGACTGCTCCGCGGTCTTCCACAGGGACTGC
TACTACGACAACTCCACCACTTGTCCCAAGTGTGCCCGGCTCAGCCTGAGGAAGCAGTCGCTCTTCCAGG
AGCCAGGTCCCGATGTGGAGGCCTAG

Translation (451 aa):
MEYDEKLARFRQAHLNPFNKQSGPRQHEQGPGEEVPDVTPEEALPELPPGEPEFRCPERVMDLGLSEDHF
SRPVGLFLASDVQQLRQAIEECKQVILELPEQSEKQKDAVVRLIHLRLKLQELKDPNEDEPNIRVLLEHR
FYKEKSKSVKQTCDKCNTIIWGLIQTWYTCTGCYYRCHSKCLNLISKPCVSSKVSHQAEYELNICPETGL
DSQDYRCAECRAPISLRGVPSEARQCDYTGQYYCSHCHWNDLAVIPARVVHNWDFEPRKVSRCSMRYLAL
MVSRPVLRLREINPLLFSYVEELVEIRKLRQDILLMKPYFITCREAMEARLLLQLQDRQHFVENDEMYSV
QDLLDVHAGRLGCSLTEIHTLFAKHIKLDCERCQAKGFVCELCREGDVLFPFDSHTSVCADCSAVFHRDC
YYDNSTTCPKCARLSLRKQSLFQEPGPDVEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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