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Report for CCDS5878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5878.1 Public Homo sapiens 7 TMEM139 24 110 108 CCDS HistoryNCBI Gene:135932Re-query CCDS DB by CCDS ID:5878.1Re-query CCDS DB by GeneID:135932See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5878.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359333.8 ENSP00000352284.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359333.8Link to Ensembl Protein Viewer:ENSP00000352284.3Re-query CCDS DB by Nucleotide ID:ENST00000359333Re-query CCDS DB by Protein ID:ENSP00000352284
Original member Current member EBI ENST00000409244.5 ENSP00000386335.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409244.5Link to Ensembl Protein Viewer:ENSP00000386335.1Re-query CCDS DB by Nucleotide ID:ENST00000409244Re-query CCDS DB by Protein ID:ENSP00000386335
Original member Current member EBI ENST00000410004.1 ENSP00000386564.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000410004.1Link to Ensembl Protein Viewer:ENSP00000386564.1Re-query CCDS DB by Nucleotide ID:ENST00000410004Re-query CCDS DB by Protein ID:ENSP00000386564
Original member Current member EBI ENST00000409102.5 ENSP00000386879.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409102.5Link to Ensembl Protein Viewer:ENSP00000386879.1Re-query CCDS DB by Nucleotide ID:ENST00000409102Re-query CCDS DB by Protein ID:ENSP00000386879
Original member Current member EBI ENST00000409541.5 ENSP00000387044.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409541.5Link to Ensembl Protein Viewer:ENSP00000387044.1Re-query CCDS DB by Nucleotide ID:ENST00000409541Re-query CCDS DB by Protein ID:ENSP00000387044
Original member Current member NCBI NM_001242773.2 NP_001229702.1 Accepted alive Link to Nucleotide Sequence:NM_001242773.2Link to Protein Sequence:NP_001229702.1Re-query CCDS DB by Nucleotide ID:NM_001242773Re-query CCDS DB by Protein ID:NP_001229702Link to BLAST:NP_001229702.1
Original member Current member NCBI NM_001242774.3 NP_001229703.1 Accepted alive Link to Nucleotide Sequence:NM_001242774.3Link to Protein Sequence:NP_001229703.1Re-query CCDS DB by Nucleotide ID:NM_001242774Re-query CCDS DB by Protein ID:NP_001229703Link to BLAST:NP_001229703.1
Original member Current member NCBI NM_001242775.3 NP_001229704.1 Accepted alive Link to Nucleotide Sequence:NM_001242775.3Link to Protein Sequence:NP_001229704.1Re-query CCDS DB by Nucleotide ID:NM_001242775Re-query CCDS DB by Protein ID:NP_001229704Link to BLAST:NP_001229704.1
Original member Current member NCBI NM_001282876.2 NP_001269805.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001282876.2Link to Protein Sequence:NP_001269805.1Re-query CCDS DB by Nucleotide ID:NM_001282876Re-query CCDS DB by Protein ID:NP_001269805Link to BLAST:NP_001269805.1
Original member Current member NCBI NM_001282877.1 NP_001269806.1 Accepted alive Link to Nucleotide Sequence:NM_001282877.1Link to Protein Sequence:NP_001269806.1Re-query CCDS DB by Nucleotide ID:NM_001282877Re-query CCDS DB by Protein ID:NP_001269806Link to BLAST:NP_001269806.1
Original member Current member NCBI NM_153345.3 NP_699176.1 Accepted alive Link to Nucleotide Sequence:NM_153345.3Link to Protein Sequence:NP_699176.1Re-query CCDS DB by Nucleotide ID:NM_153345Re-query CCDS DB by Protein ID:NP_699176Link to BLAST:NP_699176.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229702.1 216 Q8IV31 216 100% 0 0
NP_001229703.1 216 Q8IV31 216 100% 0 0
NP_001229704.1 216 Q8IV31 216 100% 0 0
NP_001269805.1 216 Q8IV31 216 100% 0 0
NP_001269806.1 216 Q8IV31 216 100% 0 0
NP_699176.1 216 Q8IV31 216 100% 0 0

Chromosomal Locations for CCDS 5878.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 143285958 143286202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143286424 143286829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGGTGCCAATGCACTTACTGGGGAGACTGGAGAAGCCGCTTCTCCTCCTGTGCTGCGCCTCCTTCCTAC
TGGGGCTGGCTTTGCTGGGCATAAAGACGGACATCACCCCCGTTGCTTATTTCTTTCTCACATTGGGTGG
CTTCTTCTTGTTTGCCTATCTCCTGGTCCGGTTTCTGGAATGGGGGCTTCGGTCCCAGCTCCAATCAATG
CAGACTGAGAGCCCAGGGCCCTCAGGCAATGCACGGGACAATGAAGCCTTTGAAGTGCCAGTCTATGAAG
AGGCCGTGGTGGGACTAGAATCCCAGTGCCGCCCCCAAGAGTTGGACCAACCACCCCCCTACAGCACTGT
TGTGATACCCCCAGCACCTGAGGAGGAACAACCTAGCCATCCAGAGGGGTCCAGGAGAGCCAAACTGGAA
CAGAGGCGAATGGCCTCAGAGGGGTCCATGGCCCAGGAAGGAAGCCCTGGAAGAGCTCCAATCAACCTTC
GGCTTCGGGGACCACGGGCTGTGTCCACTGCTCCTGATCTGCAGAGCTTGGCGGCAGTCCCCACATTAGA
GCCTCTGACTCCACCCCCTGCCTATGATGTCTGCTTTGGTCACCCTGATGATGATAGTGTTTTTTATGAG
GACAACTGGGCACCCCCTTAA

Translation (216 aa):
MVPMHLLGRLEKPLLLLCCASFLLGLALLGIKTDITPVAYFFLTLGGFFLFAYLLVRFLEWGLRSQLQSM
QTESPGPSGNARDNEAFEVPVYEEAVVGLESQCRPQELDQPPPYSTVVIPPAPEEEQPSHPEGSRRAKLE
QRRMASEGSMAQEGSPGRAPINLRLRGPRAVSTAPDLQSLAAVPTLEPLTPPPAYDVCFGHPDDDSVFYE
DNWAPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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