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Report for CCDS56338.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56338.1 Public Homo sapiens 4 ARHGEF38 24 110 108 CCDS HistoryNCBI Gene:54848Re-query CCDS DB by CCDS ID:56338.1Re-query CCDS DB by GeneID:54848See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56338.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000420470.3 ENSP00000416125.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000420470.3Link to Ensembl Protein Viewer:ENSP00000416125.2Re-query CCDS DB by Nucleotide ID:ENST00000420470Re-query CCDS DB by Protein ID:ENSP00000416125
Original member Current member NCBI NM_001242729.2 NP_001229658.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001242729.2Link to Protein Sequence:NP_001229658.1Re-query CCDS DB by Nucleotide ID:NM_001242729Re-query CCDS DB by Protein ID:NP_001229658Link to BLAST:NP_001229658.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229658.1 777 Q9NXL2-2 777 100% 0 0

Chromosomal Locations for CCDS 56338.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 105552766 105552961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105589248 105589435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105613384 105613507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105630898 105631045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105636403 105636420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105645188 105645387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105648549 105648682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105654065 105654169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105655603 105655722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105659054 105659365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105666177 105666320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105667129 105667327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105667444 105667703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105677752 105677937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2334 nt):
ATGGAGCCCAAAGAAGCCACTGGGAAAGAAAACATGGTCACCAAGAAAAAGAATCTGGCCTTCTTGAGGT
CTAGACTCTATATGCTGGAGAGAAGGAAGACTGACACTGTGGTTGAGAGCAGTGTTTCTGGGGACCACTC
TGGCACCTTGAGGAGGAGCCAATCTGACAGGACCGAATACAACCAGAAATTACAAGAAAAGATGACTCCA
CAGGGTGAGTGTTCTGTAGCTGAGACCTTAACCCCAGAGGAAGAGCATCATATGAAGAGGATGATGGCAA
AGCGGGAAAAGATCATTAAGGAGCTGATACAGACAGAAAAGGATTATCTCAATGATCTAGAGCTGTGTGT
TAGGGAAGTGGTTCAGCCCCTGAGAAATAAAAAGACTGATAGGCTGGATGTGGATAGCTTGTTTAGCAAC
ATTGAGTCCGTGCATCAGATATCAGCCAAGCTGCTGTCATTGTTGGAAGAGGCCACAACAGACGTGGAAC
CGGCCATGCAAGTAATTGGAGAAGTATTCTTGCAGATTAAAGGGCCACTGGAAGATATTTATAAAATCTA
CTGCTATCACCATGATGAAGCACATAGTATACTGGAGTCCTATGAAAAGGAAGAAGAGCTGAAGGAACAT
TTGAGCCACTGTATCCAGTCCTTAAAGAAAATATACATGCAAGAAGGCAAACCAAACTTATTGGACATGG
GCTCTTTGATGATCAAACCAATTCAACGTGTGATGAAATACCCCCTATTACTGTGCGAACTTCGGAATTC
CACCCCTCCCTCTCACCCAGATTACAGAGCACTGGACGATGCCTTTGCTGCTGTGAAGGACATTAATGTT
AACATCAATGAACTTAAAAGAAGGAAAGATTTAGTTCTAAAATACAAGAAGAATGACGAGGATGAATCAC
TTAAAGACAAATTGTCTAAACTAAATATTCATTCAATTAGCAAGAAATCAAAAAGAGTGACAAATCATCT
GAAGATTCTGACCAGAGGAGAATCACAGGTTAAAGACAATACCTTTAACAGAGAAGAAAAGCTGTTTAGA
GCTTTAGAAAAGACTGTGAGGCTTTGTGTGAAGAACATTTCACTCTGTCTTCAACACATACAGGATGCCA
TGCCCCTGGCTCTGCAGAGTGTGATGGACCTTCAGGAGATTTCATACAACAAAGACGATGAGATGGACTA
TTCTGAGACCCTAAGTAATGCCTTAAATTCGTGTCATGACTTTGCATCTCACTTACAGAGACTCATCCTG
ACCCCCTTGTCAGCCCTGCTGTCCTTATTCCCAGGGCCTCACAAGCTCATCCAGAAACGCTATGACAAAC
TGCTGGATTGCAACAGCTACCTGCAGCGATCAACGGGAGAGGAGTCAGACTTGGCCAAAAAGGAGTATGA
GGCCCTCAACGCCCAGCTTGTGGAGGAGCTCCAGGCATTCAACCAGGCTGCTCGGAAGATTCTGTTGAAC
TGTCTATGCAGCTTCATTACCCTCCTTAGGGACCTGATGCTCGTGGCACAGCAGGCTTACTCCACACTTG
TGCCGATGCCACTGTTGGTTTCAAGCATTTCTGAGATTCAGAATCAAGTACTAGAAGAGATCCAAAATTT
GAATTGTGTGAAAGAAAACAGTGCCACCTTTATTGAGAGGAAACTCAGTTTTGAAAAGAAGAAACCTGTG
CAGATTCTGCCAGAAATGCCACATCAAACTGACATTCATCGCTCCAAACTTCTATCCACATATAGTGCAG
AGGAACTCTATCAAGCTAAGCGCAAGTGCAATGCTACACAAGAATATGACATCAATCTTCTGGAAGGAGA
CTTGGTGGCTGTGATAGAACAGAAAGATCCACTGGGGAGTACAAGCAGGTGGCTTGTGGACACAGGAAAT
GTGAAAGGATATGTTTATTCCTCCTTCCTAAAACCCTACAATCCAGCAAAAATGCAGAAAGTGGATGCTG
AGAACAGGTTCTGTGACGATGATTTTGAGAACATCAGCCTCTTCGTGTCTTCACGGCCAGCTAGTGACAG
TGTCACAGGCACCTCAGAAAGCAGCATTGGTGATAGCAGCTCATCTCTTAGTGGCACATGTGGAAAGTTT
GAAACAAATGGTACTGATGTTGACAGTTTTCAAGAAGTAGACGAACAGATTTTCTATGCAGTTCATGCTT
TTCAAGCACGGAGTGACCATGAACTCAGCCTTCAGGAATACCAGAGAGTTCATATACTCAGGTTTTGTGA
CCTAAGTGGCAATAAAGAGTGGTGGTTAGCTGAAGCTCAAGGGCAGAAAGGATACGTGCCAGCTAACTAC
CTTGGAAAGATGACTTATGCTTAA

Translation (777 aa):
MEPKEATGKENMVTKKKNLAFLRSRLYMLERRKTDTVVESSVSGDHSGTLRRSQSDRTEYNQKLQEKMTP
QGECSVAETLTPEEEHHMKRMMAKREKIIKELIQTEKDYLNDLELCVREVVQPLRNKKTDRLDVDSLFSN
IESVHQISAKLLSLLEEATTDVEPAMQVIGEVFLQIKGPLEDIYKIYCYHHDEAHSILESYEKEEELKEH
LSHCIQSLKKIYMQEGKPNLLDMGSLMIKPIQRVMKYPLLLCELRNSTPPSHPDYRALDDAFAAVKDINV
NINELKRRKDLVLKYKKNDEDESLKDKLSKLNIHSISKKSKRVTNHLKILTRGESQVKDNTFNREEKLFR
ALEKTVRLCVKNISLCLQHIQDAMPLALQSVMDLQEISYNKDDEMDYSETLSNALNSCHDFASHLQRLIL
TPLSALLSLFPGPHKLIQKRYDKLLDCNSYLQRSTGEESDLAKKEYEALNAQLVEELQAFNQAARKILLN
CLCSFITLLRDLMLVAQQAYSTLVPMPLLVSSISEIQNQVLEEIQNLNCVKENSATFIERKLSFEKKKPV
QILPEMPHQTDIHRSKLLSTYSAEELYQAKRKCNATQEYDINLLEGDLVAVIEQKDPLGSTSRWLVDTGN
VKGYVYSSFLKPYNPAKMQKVDAENRFCDDDFENISLFVSSRPASDSVTGTSESSIGDSSSSLSGTCGKF
ETNGTDVDSFQEVDEQIFYAVHAFQARSDHELSLQEYQRVHILRFCDLSGNKEWWLAEAQGQKGYVPANY
LGKMTYA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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