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Report for CCDS89130.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89130.1 Public Mus musculus 17 Trip10 23 108 98 CCDS HistoryNCBI Gene:106628Re-query CCDS DB by CCDS ID:89130.1Re-query CCDS DB by GeneID:106628See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89130.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000224885.1 ENSMUSP00000153576.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224885.1Link to Ensembl Protein Viewer:ENSMUSP00000153576.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224885Re-query CCDS DB by Protein ID:ENSMUSP00000153576
Original member NCBI NM_001242390.1 NP_001229319.1 Updated not alive Link to Nucleotide Sequence:NM_001242390.1Link to Protein Sequence:NP_001229319.1Re-query CCDS DB by Nucleotide ID:NM_001242390Re-query CCDS DB by Protein ID:NP_001229319
Current member NCBI NM_001242390.2 NP_001229319.1 Accepted alive Link to Nucleotide Sequence:NM_001242390.2Link to Protein Sequence:NP_001229319.1Re-query CCDS DB by Nucleotide ID:NM_001242390Re-query CCDS DB by Protein ID:NP_001229319Link to BLAST:NP_001229319.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229319.1 602 Q8CJ53-2 602 100% 0 0

Chromosomal Locations for CCDS 89130.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 57249548 57249571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57250742 57250857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57250955 57251011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57253262 57253409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57253497 57253559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57254057 57254161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57254260 57254388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57255018 57255164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57255273 57255467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57256860 57257027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57257235 57257344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57261290 57261422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57261640 57261788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57262357 57262472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57263000 57263148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGGATTGGGGTACCGAGTTGTGGGATCAGTTTGAGGTGCTGGAACGCCACACGCAGTGGGGGCTGGATT
TGTTGGACAAATACGTGAAGTTCGTGAAAGAACGCGCGGAGGTGGAGCAGGCTTATGCTAAGCAACTCCG
GAGCCTGGTGAAAAAGTATCTTCCCAAGAGACCTACCAAAGATGACCCTGAAGTCAAGTTCAGCCAGCAG
CAGTCATTTGTCCAGCTTCTCCAGGAGGTCAATGACTTCGCAGGCCAGAGAGAGCTGGTGGCTGAGAGCC
TCGGTATCCGAGTGTGTCTGGAGCTGGCTAAGTATTCACAGGAGATGAAGCAGGAGAGGAAGATGCACTT
CCAGGAAGGTCGTCGGGCCCAGCAGCAGCTGGAGAATGGCTTCAAACAGCTGGAGAATAGTAAGCGGAAG
TTTGAACGAGATTGCCGGGAGGCTGAGAAAGCGGCTCACACTGCTGAGCGCCTAGATCAGGACATTAATG
CCACCAAGGCGGATGTGGAGAAGGCCAAGCAGCAAGCTCACCTTCGGAACCACATGGCAGAAGAGAGCAA
GAATGAATATGCGGCCCAGCTGCAGCGCTTCAACCGAGACCAGGCTCACTTCTACTTCTCACAGATGCCC
CAGATATTCGATAAGCTGCAGGACATGGACGAACGCCGGGCCACCCGCCTGGGGGCCGGGTATGGGCTCT
TATCAGAGGCTGAACTGCAGGTGGTTCCCATTATTGGCAAATGCTTGGAGGGCATGAAGGTGGCCGCCGA
GTCTGTGGATGCTAAGAACGACTCACAGGTCCTCATCGAATTACACAAGTCCGGGTTTGCCCGCCCAGGG
GACTTGGAATTTGAAGACTTTAGCCAAGTTATCAACCGAGTGCCTTCGGACAGCAGCCTGGGCACCCCGG
ATGGCAGGCCTGAGCTCCGAGCAGCCTCCAGCCGTAGCCGCGCCAAGCGTTGGCCTTTCGGGAAAAAGAA
CAAGCCACGTCCCCCATCCCTGTCCCTCCTGGGGGGTCACCTACCCTCCACACTGTCTGATGGACCCTCA
TCCCCCCGTTCTGGCCGCGACCCCTTGGCCATACTGAGCGAGATCAGTAAGTCGGTCAAACCGCGGCTAG
CATCCTTCCGCAGCTTCCGAGGTGGCCGTGGGACCGTGGCTACCGAAGATTTCAGTCACTTGCCCCCGGA
GCAGCAGAGAAAGCGACTTCAGCAACAGCTGGAAGAGCGGAACCGAGAGTTGCAGAAGGAGGAGGACCAG
AGGGAGGCCCTGAAGAAGATGAAAGATGTATATGAGAAAACACCACAAATGGGGGACCCTGCCAGCTTAG
AGCCCCGCATTGCAGAGACCCTGGGCAACATTGAGAGGCTGAAGTTGGAAGTGCAGAAGTATGAGGCTTG
GTTGGCAGAAGCTGAAAGCCGGGTCCTCAGTAACCGAGGGGACAGCCTAAGCCGTCACGCTAGGCCCCCT
GATCCCCCAACTACTGCCCCACCTGATAGCAGCAGTAGCAGCACCAACAGTGGATCCCAGGACAATAAGG
AGAGCTCAGAAGAGCCCCCTTCAGAAGGCCAGGACACCCCCATCTATACTGAGTTCGATGAGGACTTTGA
GGAGCCTGCATCCCCTATCGGCCAGTGTGTGGCTATCTACCATTTTGAAGGATCCAGCGAGGGAACCGTC
TCCATGTCCGAGGGGGAAGACCTCAGCCTGATGGAGGAAGACAAGGGTGATGGATGGACGCGGGTCAGGA
GGAAACAGGGAGCTGAGGGCTACGTGCCCACCTCTTACCTCCGAGTCACACTCAACTGA

Translation (602 aa):
MDWGTELWDQFEVLERHTQWGLDLLDKYVKFVKERAEVEQAYAKQLRSLVKKYLPKRPTKDDPEVKFSQQ
QSFVQLLQEVNDFAGQRELVAESLGIRVCLELAKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRK
FERDCREAEKAAHTAERLDQDINATKADVEKAKQQAHLRNHMAEESKNEYAAQLQRFNRDQAHFYFSQMP
QIFDKLQDMDERRATRLGAGYGLLSEAELQVVPIIGKCLEGMKVAAESVDAKNDSQVLIELHKSGFARPG
DLEFEDFSQVINRVPSDSSLGTPDGRPELRAASSRSRAKRWPFGKKNKPRPPSLSLLGGHLPSTLSDGPS
SPRSGRDPLAILSEISKSVKPRLASFRSFRGGRGTVATEDFSHLPPEQQRKRLQQQLEERNRELQKEEDQ
REALKKMKDVYEKTPQMGDPASLEPRIAETLGNIERLKLEVQKYEAWLAEAESRVLSNRGDSLSRHARPP
DPPTTAPPDSSSSSTNSGSQDNKESSEEPPSEGQDTPIYTEFDEDFEEPASPIGQCVAIYHFEGSSEGTV
SMSEGEDLSLMEEDKGDGWTRVRRKQGAEGYVPTSYLRVTLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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