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Report for CCDS30138.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30138.1 Public Mus musculus X Zfp36l3 23 108 98 CCDS HistoryNCBI Gene:333473Re-query CCDS DB by CCDS ID:30138.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30138.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071711.3 ENSMUSP00000071630.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071711.3Link to Ensembl Protein Viewer:ENSMUSP00000071630.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000071711Re-query CCDS DB by Protein ID:ENSMUSP00000071630
Original member Current member NCBI NM_001009549.2 NP_001009549.1 Accepted alive Link to Nucleotide Sequence:NM_001009549.2Link to Protein Sequence:NP_001009549.1Re-query CCDS DB by Nucleotide ID:NM_001009549Re-query CCDS DB by Protein ID:NP_001009549Link to BLAST:NP_001009549.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001009549.1 725 Q5ISE2 725 100% 0 0

Chromosomal Locations for CCDS 30138.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 53774068 53776245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2178 nt):
ATGGCCAACAACAATCTGAACCGCCCGCTCAACACTAATGTGGCTGATTCTTCCAACTCCAGCTCAACAC
CTGGCACTGCTCCACCACCATCTTCCAGCGACCCCCAAGTGCTCGGCCACCAGGCTCCCAGTTCCAGTGC
CTCCAGCCTCACCGAGGACTGCTCGTCCAGTTTTGCGAGAGACCTGAACAGCTACAATAATGGTCAGTCG
GGGGCAACTGGTGCGGTGTCCTGGGAAGCTCCCCATGAGCCCTCAGAGGCTAACGCGGTGTCGCAGATCC
ACCCGCGGAATGGCGAACATAGCCTGCAGCAGAAGCCTAAGCCACAGAAGGTGAGCGGCTCGAGCTCCCT
GGCCACTTCTGAGCGCTATAAGACTGAGCTATGTCGGCCCTTTGAGGAAAGCGGCATTTGCAAGTATGGC
CACAAGTGCCAGTTCGCGCATGGCTACCGCGAACTGCGTACCCTGTCAAGGCACCCCAAGTACAAGACGG
AGCCTTGCCGCACCTTCCACAGCGTTGGCTTTTGCCCCTATGGCACTCGCTGTCACTTCATTCACAACCA
GCCCGAGCAGCAACCTGTGCTTTCCGAGAGCACCTTGGAGGAGCCCAGCTCCTTCAATGGCTCCAATGTG
CTGCATTTGGGCGTTAACGGGGAGCAGCAGCCCGGACTGCAGAGTGACAGCCCTTCGGGCTTCCTGTCGG
TCAACAGTCAAGCCCTCCAGGCACCTCTGCAGCTCAACCAGCAGGCGTTGAGCTCAGGCGGGGTTATGCC
CTCATCACACCCTGCAGCCGCCAACCTCCGGATGATGTGCTGCAGAACATCATCCTCTACCACAGCCCAC
GACGCTGACAAAGACCCCGACAAAGATGCTGACAAAGACCCGAGCAACAACTCAGCCAACGATGCCCTCG
CCTTCCCCCAGGAGCCAGGTGACTTCTCTCCTGTGGCATTCCAGAACCCTAACACTGCTACCACGACTCC
CACTGCCTTCTACAACAACCAGCAGCAGATGGGCCTGGCAGCTTCCGCGCAGTTCCAGATGCCCCTTGCC
AGGCCTCTGCCTTCAGCCACCATCTTTGGCCAGGCCAGTGTTGGTCCTGCCCTTACTCCTGGTGCTGCCA
TGGCTCCTGGAGCTGCCCTTGCTCCTGCGGCAGCCCTCACTCCTGCGGCAGCCCTTGCTCCTGGGGCGGC
CATGGCTCTTGGAGCTGCCATGGCTACTGGGGCTGCCATGGCTACTGGAGCTGCCCTCACTCCTGGGGCA
GCCCTCGCTCTTGGAGCTGCCATGGCTGCTGGGGCGGCCCTTGCTCCTGGAGCTGCCATGGCTCCTGGGG
CTGCCATGGCTACTGGAGCGGCCCTCGCTTTTGGGGCTGCCATGGCTACTGGGACTACCCTCACTCCTGG
GGCTGCCATGGCTCTTGGTGCTGCCATGGCTACTGGAGCTGCCCTCGCTCCTGGGGCAGCAGTGGCTCCT
AGGGCGGCCCTTGCTCCTAGGGCTGCATTTGCTCCTGGGGCGGCGGCCCTCGCTCCTAGGGCTGCCCTCC
CTCCTGGAGCGGCCCTCACTCCTGGGGCTGCACTTGCTCCTGGGGCGGCCCTCGCTCCTAGGGCTGCCCT
CCCTCCTGGGGCTACCCTCCGTCCTGGGGCGGCCCTCATTCCTAGGGCGGCCCTTGCTCCTGGGGCTGCC
CTCGCCCCTGGAGCGGCCCTCACTCCTGGGGCTGCACTTGCTCCTGGGGCGACCCTTGCTCCTAGGGCAG
CTCTCGCTCCTGGGGCTGCCCTTGCTCCCAGAATTACCATCACTTCCAGGGCTGCCATCACTCCGGGAGT
TGCTATTGCTCCAGGAGTTGCCACAGCCTCTACCGGCATATTGGCTCCAGGTGCTGCAACTGCCACTGTG
GGCAATACATCCTCGACTACTATCACTGCTGCCACCGCTGCAGAGGGTGCCGCACCACACTTCACCTTCC
AACTGCCAGATGTCGAGTCGGAGTCTGAGTCTGAGTCGCTAGAGTTCGACGTGGTCACCAGCACCCTGGA
TTCCCTGTTGGTCAGTGATGACGAAGATGAAGACGACTTTCTGAGGCGTTCCTCGAGCTCCAGCAGCCTC
AATGAATCCGAATTCGACAACACCAACTCCAGCCGCCGTCTGCCCATCTTCAGCCGCTTCTCAGACTCTG
AAAAATGA

Translation (725 aa):
MANNNLNRPLNTNVADSSNSSSTPGTAPPPSSSDPQVLGHQAPSSSASSLTEDCSSSFARDLNSYNNGQS
GATGAVSWEAPHEPSEANAVSQIHPRNGEHSLQQKPKPQKVSGSSSLATSERYKTELCRPFEESGICKYG
HKCQFAHGYRELRTLSRHPKYKTEPCRTFHSVGFCPYGTRCHFIHNQPEQQPVLSESTLEEPSSFNGSNV
LHLGVNGEQQPGLQSDSPSGFLSVNSQALQAPLQLNQQALSSGGVMPSSHPAAANLRMMCCRTSSSTTAH
DADKDPDKDADKDPSNNSANDALAFPQEPGDFSPVAFQNPNTATTTPTAFYNNQQQMGLAASAQFQMPLA
RPLPSATIFGQASVGPALTPGAAMAPGAALAPAAALTPAAALAPGAAMALGAAMATGAAMATGAALTPGA
ALALGAAMAAGAALAPGAAMAPGAAMATGAALAFGAAMATGTTLTPGAAMALGAAMATGAALAPGAAVAP
RAALAPRAAFAPGAAALAPRAALPPGAALTPGAALAPGAALAPRAALPPGATLRPGAALIPRAALAPGAA
LAPGAALTPGAALAPGATLAPRAALAPGAALAPRITITSRAAITPGVAIAPGVATASTGILAPGAATATV
GNTSSTTITAATAAEGAAPHFTFQLPDVESESESESLEFDVVTSTLDSLLVSDDEDEDDFLRRSSSSSSL
NESEFDNTNSSRRLPIFSRFSDSEK


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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