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Report for CCDS14897.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14897.1 Public Mus musculus 1 Lyg2 23 108 98 CCDS HistoryNCBI Gene:332427Re-query CCDS DB by CCDS ID:14897.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 14897.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078307.6 ENSMUSP00000077422.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078307.6Link to Ensembl Protein Viewer:ENSMUSP00000077422.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000078307Re-query CCDS DB by Protein ID:ENSMUSP00000077422
Original member Current member NCBI NM_001033427.3 NP_001028599.1 Accepted alive Link to Nucleotide Sequence:NM_001033427.3Link to Protein Sequence:NP_001028599.1Re-query CCDS DB by Nucleotide ID:NM_001033427Re-query CCDS DB by Protein ID:NP_001028599Link to BLAST:NP_001028599.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028599.1 213 Q3V1I0 213 100% 0 0

Chromosomal Locations for CCDS 14897.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37907557 37907675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37908869 37909007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37909896 37910092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37911059 37911202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37915720 37915762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGGTGCCCTCGGTGGTGTTCTGGGGACTTATTGCTCTCGTTGGCACTGCCAAGGGCTCATATACTCACT
CTGTGCACTCCATGAACCCTCATGTGCACCCTCGTCTGTACCATGGCTGCTATGGGGACATCATGACCAT
GGAGACTTTTGGGGCCCCCTGCGACATAAATAATCTGATGAACTGTGGGATCCACGGTTCGGAAATGTTT
GCCGAGATGGATTTGAAAGCCATAAAACCTTACCGGATCCTCATCAAAGAAGTGGGGCAGAGACACTGTA
TTGACCCAGCCCTCATCGCTGCCATCATCTCCAGGGAAAGCCACGGCGGGGCTGTCCTGCAAAATGGCTG
GGACCATAAGGGGCAGAGGTTTGGCTTGATGCAGCTTGATAAAAATATGTACCATCCTATTGGTTCCTGG
GATAGCAAGGAACACCTTCTACAGTCTGTTGGGATTCTAACAGAAAGAATTAAGGCAATGAAGAGGAAAT
TTCCCACCTGGAATACAGCTCAGCAGCTGAAAGGTGGTCTGACTGCTTTTAAGTCGGGGATGGAAACTAT
TGTCACTCCTGCAGACATAGACGGTGACTTAGTGGATGATGTCCTTGCCCGGGCCAAATTCTATAAGAGA
CATGGCTTCTAG

Translation (213 aa):
MVPSVVFWGLIALVGTAKGSYTHSVHSMNPHVHPRLYHGCYGDIMTMETFGAPCDINNLMNCGIHGSEMF
AEMDLKAIKPYRILIKEVGQRHCIDPALIAAIISRESHGGAVLQNGWDHKGQRFGLMQLDKNMYHPIGSW
DSKEHLLQSVGILTERIKAMKRKFPTWNTAQQLKGGLTAFKSGMETIVTPADIDGDLVDDVLARAKFYKR
HGF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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