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Report for CCDS24319.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24319.1 Public Mus musculus 10 Or6c3 23 108 98 CCDS HistoryNCBI Gene:258544Re-query CCDS DB by CCDS ID:24319.1Re-query CCDS DB by GeneID:258544See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24319.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056961.3 ENSMUSP00000054710.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056961.3Link to Ensembl Protein Viewer:ENSMUSP00000054710.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000056961Re-query CCDS DB by Protein ID:ENSMUSP00000054710
Original member Current member EBI ENSMUST00000213222.1 ENSMUSP00000151054.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213222.1Link to Ensembl Protein Viewer:ENSMUSP00000151054.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213222Re-query CCDS DB by Protein ID:ENSMUSP00000151054
Original member Current member NCBI NM_146551.1 NP_666762.1 Accepted alive Link to Nucleotide Sequence:NM_146551.1Link to Protein Sequence:NP_666762.1Re-query CCDS DB by Nucleotide ID:NM_146551Re-query CCDS DB by Protein ID:NP_666762Link to BLAST:NP_666762.1

Chromosomal Locations for CCDS 24319.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 129472694 129473629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGAATCACACAGAAATTACAGAATTCATCCTCTTAGGCCTTTCTGATGACCCTGACCTTCAGATTGTGA
TTTTCCTCTTTTTATTAATCACATATATGTTAAGTGTCATTGGAAACCTGACTATCATTGTTTTGACCTT
CATAGACACCCATCTACAAACACCAATGTATTTCTTCCTCCGGAATTTTGCTTTCTTGGAAGTCTCATTT
ACAAGTGTATGTATCCCTAGATTTCTGGGGTCTATTGTCACCCGGAATAAGACAATTTCCTATAACAACT
GTGCTGCCCAACTCTTTTTCTTTATCTTCATGGGTGTGTGTGAGTTTTACATTCTCACTGCCATGTCCTA
TGACCGCTATGTTGCCATCTGTAAGCCCCTTCACTACACAACCATCATGAACAGGAAACTCTGCACCTTG
TTTGTGTTGTGTGCCTGGCTGGCTGGTTTTCTGACTGTTTTCCCACCTCTTATGCTTTTGCTCCAGCAGG
ATTACTGTGCTTCTAATGTCATTGATCATTTTGCATGTGACTTTTTTCCCCTCTTGCAACTGTCTTGCTC
AGATACATTGTTTCTAGAAGTAATTGGCTTCTATGTTGCTCTGGTTGCTCTTCTGTTCACTTTGGCATTG
GTGATTTTATCTTACATGTACATTATCAGGACTATTTTAAGAATTCCATCTACCAGCCAGCGGAAAAAGG
CTTTCTCCACCTGTTCCTCTCACATGATTGTCATCTCCCTCTCTTATGGAAGCTGTATATTCATGTATGC
TAATCCCTCTGCAAAAGAAAAGGCCTCATTGACCAAAGGCGTGGCAATTCTCAATACCTCTGTTGTCCCC
ATGTTAAATCCCTTCATTTATACACTAAGGAACCAGCAAGTAAAGCAAGCATTCAAAGGTGCAGTACACA
AACTAGTATTTTCTGTAAGCAAATGA

Translation (311 aa):
MNHTEITEFILLGLSDDPDLQIVIFLFLLITYMLSVIGNLTIIVLTFIDTHLQTPMYFFLRNFAFLEVSF
TSVCIPRFLGSIVTRNKTISYNNCAAQLFFFIFMGVCEFYILTAMSYDRYVAICKPLHYTTIMNRKLCTL
FVLCAWLAGFLTVFPPLMLLLQQDYCASNVIDHFACDFFPLLQLSCSDTLFLEVIGFYVALVALLFTLAL
VILSYMYIIRTILRIPSTSQRKKAFSTCSSHMIVISLSYGSCIFMYANPSAKEKASLTKGVAILNTSVVP
MLNPFIYTLRNQQVKQAFKGAVHKLVFSVSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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