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Report for CCDS25012.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25012.1 Public Mus musculus 11 Or1e23 23 108 98 CCDS HistoryNCBI Gene:258435Re-query CCDS DB by CCDS ID:25012.1Re-query CCDS DB by GeneID:258435See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25012.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092921.2 ENSMUSP00000091575.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092921.2Link to Ensembl Protein Viewer:ENSMUSP00000091575.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000092921Re-query CCDS DB by Protein ID:ENSMUSP00000091575
Original member Current member NCBI NM_146443.1 NP_666654.1 Accepted alive Link to Nucleotide Sequence:NM_146443.1Link to Protein Sequence:NP_666654.1Re-query CCDS DB by Nucleotide ID:NM_146443Re-query CCDS DB by Protein ID:NP_666654Link to BLAST:NP_666654.1

Chromosomal Locations for CCDS 25012.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73516259 73517197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGATAATGAACAACAAAACTGTCATCTCCCAGTTCATCCTCCTGGGCCTGCCCATACCCCAAGAGTACC
AGCACCTGTACTATGCCCTGTTCCTGGCCATGTACCTCACCACCGTCCTGGGGAACCTCATCATCATTAT
CCTCATAATACTGGACTCCCATCTCCACACACCCATGTACTTGTTTCTCAGCAACTTGTCCTTCTCTGAT
CTCTGCTTTTCCTCTGTCACAATGCCCAAGTTGCTACAGAACATGCAGAGCCAGGACACGTCCATCTCCT
ATGCTGGCTGTCTGACACAAATGTACTTTTTATTGGTTTTTGGAGACCTGGAGAGCATCCTTCTTTTGGT
CATGGCTTATGACCGGTATGTGGCTGTCTGCTTCCCCCTTCATTACATGAGCATCATGAGCCCCACACTC
TGTGTGTGTCTGCTAGTGTTATCCTGGGTATTTACTGTGCTGTATTCTATGTTGCACACTCTACTCTTGT
CTAGATTGTCATTCTGTGAGGATAACTTGATCCACCACTTTTTCTGTGACATATCTGCCCTGCTCAAGTT
GGCTTGCTCTGACATTCATATTAATGAATTAATGATATTTATCATGGGAGGGCTTGTTAGCATCATCCCA
TTCTTACTCATTGTTGTGTCCTATATACAAATTGTCTACTCCATTCTAAAGATTTCATCTGCTCATGTTT
TACACAAGATCTTCTCCACCTGTGGGTCCCACCTGTCTGTAGTCTCACTGTTCTATGGGACAATTTTTGC
TCTCTACTTATGTCCATCAGCTAATAACTCTACTGTGAAGGAGATTTCCATGGCCATGATGTGCACAGTG
GTGACTCCCATGCTGAACCCTTTCATCTACAGCCTGAGGAATAGAGATATGAGAGATGCCCTTTTTGGAG
TCCTTGGCAAGAAGAAAATCTCTTTATGA

Translation (312 aa):
MIMNNKTVISQFILLGLPIPQEYQHLYYALFLAMYLTTVLGNLIIIILIILDSHLHTPMYLFLSNLSFSD
LCFSSVTMPKLLQNMQSQDTSISYAGCLTQMYFLLVFGDLESILLLVMAYDRYVAVCFPLHYMSIMSPTL
CVCLLVLSWVFTVLYSMLHTLLLSRLSFCEDNLIHHFFCDISALLKLACSDIHINELMIFIMGGLVSIIP
FLLIVVSYIQIVYSILKISSAHVLHKIFSTCGSHLSVVSLFYGTIFALYLCPSANNSTVKEISMAMMCTV
VTPMLNPFIYSLRNRDMRDALFGVLGKKKISL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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