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Report for CCDS15992.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15992.1 Public Mus musculus 2 Or12k7 23 108 98 CCDS HistoryNCBI Gene:258615Re-query CCDS DB by CCDS ID:15992.1Re-query CCDS DB by GeneID:258615See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15992.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120704.1 ENSMUSP00000114121.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120704.1Link to Ensembl Protein Viewer:ENSMUSP00000114121.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120704Re-query CCDS DB by Protein ID:ENSMUSP00000114121
Original member Current member EBI ENSMUST00000216706.2 ENSMUSP00000149581.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216706.2Link to Ensembl Protein Viewer:ENSMUSP00000149581.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216706Re-query CCDS DB by Protein ID:ENSMUSP00000149581
Original member Current member NCBI NM_146622.1 NP_666833.1 Accepted alive Link to Nucleotide Sequence:NM_146622.1Link to Protein Sequence:NP_666833.1Re-query CCDS DB by Nucleotide ID:NM_146622Re-query CCDS DB by Protein ID:NP_666833Link to BLAST:NP_666833.1

Chromosomal Locations for CCDS 15992.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 37068307 37069260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGGCCACTAAAAACAAGACAGAAGTGACTGAGTTTGTGTTGTTGGGATTGTCCAGTAGGCCAGAGATAC
AACCAGTTATTTTTGGAGTTGTCCTTATCATGTACCTGATGGCAGTTTTGGGCAATACTCTACTAATACT
TGTTGCTTGTTCAGATCCCAGGCTTCAGACCCCCATGTACTTCCTTCTCAGCCAGCTGTCCTTGATTGAC
ATATCTTTAACAACCATCACTATTCCTCAGATGCTAGTGCACACACTCTCTGTAAATCGGAGCATTTCCT
ATAATCGTTGCATGACACAATTATTTTTCTTTATGGCAGTGGGCAGCATGGAAGTCTACTTGCTGGGTGC
AATGGCATATGACCGCTATGTTGCCATCTGTGACCCTTTAAGATACTCTGCCATTGTCAGCTATAGCCTC
TGTCTGCAAATAACATTGACCTCATGGATGGTGGTCAGCCTTAACAGTCTCCTGTACAGTGTGTTAGTCA
CTCGTTTAACCTTCTGTGGCAACAAGGTCACTCACTTCTTCTGTGACATCACTCCTCTGCTGAAGCTCTC
TTGTACTCGACCAGTGCTTAATGAAATGCTAATCTTCACTGAAGGTGTAGCTGTGGTGGGTAGCCCCTTC
TTCTTCATTTGGGGTTCTTATGTTCGAATAGGTATTGCCATGGCCCACATGCACTCCTTTGCTGCCCTGA
AGAAAGCTCTGTCTACCTGTAGCTCCCACATTCTGGTTGTGCTGCTCCTTTTTGGCACTTTGGCTAGAAT
GTACCTTAAGCCATCATCCAGCTATGACTTAGGCCAGGATCGCCAGGTTGCCATCTTCTACACGCTCATC
TCCCCTATGTTAAATCCACTAATTTACAGCCTTAGGAACCAAGATGTTAAAGGAGCACTATGGAGGCTTT
TTAGGAAACTCCATACTTCAGACTGGCTCTCAGACAAAGAATGA

Translation (317 aa):
MATKNKTEVTEFVLLGLSSRPEIQPVIFGVVLIMYLMAVLGNTLLILVACSDPRLQTPMYFLLSQLSLID
ISLTTITIPQMLVHTLSVNRSISYNRCMTQLFFFMAVGSMEVYLLGAMAYDRYVAICDPLRYSAIVSYSL
CLQITLTSWMVVSLNSLLYSVLVTRLTFCGNKVTHFFCDITPLLKLSCTRPVLNEMLIFTEGVAVVGSPF
FFIWGSYVRIGIAMAHMHSFAALKKALSTCSSHILVVLLLFGTLARMYLKPSSSYDLGQDRQVAIFYTLI
SPMLNPLIYSLRNQDVKGALWRLFRKLHTSDWLSDKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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