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Report for CCDS23036.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23036.1 Public Mus musculus 9 Or8g17 23 108 98 CCDS HistoryNCBI Gene:258742Re-query CCDS DB by CCDS ID:23036.1Re-query CCDS DB by GeneID:258742See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23036.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073671.2 ENSMUSP00000073352.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073671.2Link to Ensembl Protein Viewer:ENSMUSP00000073352.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000073671Re-query CCDS DB by Protein ID:ENSMUSP00000073352
Original member Current member EBI ENSMUST00000214410.1 ENSMUSP00000149294.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214410.1Link to Ensembl Protein Viewer:ENSMUSP00000149294.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214410Re-query CCDS DB by Protein ID:ENSMUSP00000149294
Original member Current member NCBI NM_146747.1 NP_666958.1 Accepted alive Link to Nucleotide Sequence:NM_146747.1Link to Protein Sequence:NP_666958.1Re-query CCDS DB by Nucleotide ID:NM_146747Re-query CCDS DB by Protein ID:NP_666958Link to BLAST:NP_666958.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666958.1 306 Q60884 306 100% 0 0

Chromosomal Locations for CCDS 23036.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 39018619 39019539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGAAAAAGGCAATCAATCCACAGTGAACAAATTCTTCCTTTCTGGCTTAACAGAACAACCAGAACTGC
AACTGCCACTCTTCCTCCTCTTTCTTGGAATCTACCTGCTCACAGTGCTGGGGAACCTGGGCATGATCAT
CCTGATCCTGCTCAGCTCGTACCTGCACACCCCTATGTACTTCTTCCTCAGTAGTCTGTCCTTCATTGAC
TTCTGCCAATCTACTGTCATTACCCCAAAAATGCTGGTGAAATTTGTGAGGGAGAAGAATGAAATCTCCT
ACCCTGAGTGCATAACTCAACTTTGCTTCTTTGTCATTTTTGCTGTTTCAGAAAGTTACATGCTGGCTGC
AATGGCATATGATCGCTATGTTGCCATCTGTAGCCCCTTACTTTACAGTAGCATCATGTCTCAACATAAG
TGCCTTTCTCTCGTTTTAGGAGTTTACATTCTAGGCATAGTTTGTGCATCAGCTCATGTAGGATGTATAT
TTAGGATTGATTTCTGCAAATCTGATTTGATCAACCATTATTTCTGTGACCTTATTTCTATTCTTAATCT
CTCATGCTCTAATATTTTTGTGAATGATCTCGTAATTCTAATTTTTAGTCTAATTAATACCATTTTCCCA
ACCCTGACCATCCTCAGTTCTTATGCTTTCATCATTATCAGCATCCTACGCATTAAATCCACTGAGGGAA
GATCTAAAGCCTTCAGTACCTGCAGCTCCCACATCTCAGCTGTTGCTATCTTTTATATCTCTGCTGGATT
TACGTATCTGAACCCATCATCTTCCCATTCGATGGATGAAGGAAAAGTGTCTTCTATATTTTACACCATC
ATTGTTCCCATGCTCAACCCCCTGATTTACAGTCTTAGGAATAAGGACGTGAAAATTGCTCTGAAGAAAA
TGATTGAATGA

Translation (306 aa):
MEKGNQSTVNKFFLSGLTEQPELQLPLFLLFLGIYLLTVLGNLGMIILILLSSYLHTPMYFFLSSLSFID
FCQSTVITPKMLVKFVREKNEISYPECITQLCFFVIFAVSESYMLAAMAYDRYVAICSPLLYSSIMSQHK
CLSLVLGVYILGIVCASAHVGCIFRIDFCKSDLINHYFCDLISILNLSCSNIFVNDLVILIFSLINTIFP
TLTILSSYAFIIISILRIKSTEGRSKAFSTCSSHISAVAIFYISAGFTYLNPSSSHSMDEGKVSSIFYTI
IVPMLNPLIYSLRNKDVKIALKKMIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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