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Report for CCDS26272.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26272.1 Public Mus musculus 13 Or2b28 23 108 98 CCDS HistoryNCBI Gene:258526Re-query CCDS DB by CCDS ID:26272.1Re-query CCDS DB by GeneID:258526See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26272.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059216.4 ENSMUSP00000055870.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059216.4Link to Ensembl Protein Viewer:ENSMUSP00000055870.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000059216Re-query CCDS DB by Protein ID:ENSMUSP00000055870
Original member Current member NCBI NM_146533.1 NP_666744.1 Accepted alive Link to Nucleotide Sequence:NM_146533.1Link to Protein Sequence:NP_666744.1Re-query CCDS DB by Nucleotide ID:NM_146533Re-query CCDS DB by Protein ID:NP_666744Link to BLAST:NP_666744.1

Chromosomal Locations for CCDS 26272.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 21346930 21347880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGTCAGTGAATCGCATCAGTGCAGATTTCCCAGAAGATTTCATTCTTATGGGCTTTACCAAGTACCCAT
GGCTGGATCTCCCTCTCTTCTTTGTCCTCCTGACCTCCTACATGTTCACATTGCTGGGAAACATTGCTAT
TATTTTGGTTTCTCAGCTCGATTCCCAGCTCCAAAGTCCCATGTATTTCTTCCTTACCAGCCTTTCATTT
TTGGATCTCTGTTTTACCACTACGACTGTCCCTCAAATGTTGTTTAACTTACAGGGACCCAACAAGAACA
TCACTTACATAGGCTGCATGGCCCAGGCCTATGTGTTTCATTGGTTAGGCTGTACTGAATGTGTTCTTCT
TGGTATCATGGCCTTAGATCGCTATGTGGCTGTGTGCAAGCCTCTGAGGTACTCTGTCATTATGGACCAC
AGGCTCTGTCTGCAGCTGTCTGGTGCTGCTTGGCTCACTGGCCTGGCTAACTCACTACTACAGTCTACAC
TTACCATACAGTTGCCCCTGTGTGGGAATCGGATGCTTGACCACTTCTTCTGTGAGCTGCCTGGGCTTAT
TAAGATGTCTTGTGGGGACACCACAGTCAATGAGGTTACTTTAGCAGTGGTGGCCACATTCTTCATAATG
GGTCCCCTCTCCATGATACTTGTATCATATAGTTACATTGCTCAAACTGTATTTCGAATGCCTTCTGCGG
CAGGGAGGCTCAAGGCTTTCAACACTTGCTCATCGCACCTGCTGGTGGTGTCTTTATTTTATGGACCAGG
GATCTACATCTACATGCAACCCTCAGAGGATGGCTCCCAAGACCTTATCAAGGTCTTGACTCTGTTTTAC
TGTGTCATCACTCCCATGGCTAATCCATTCATCTATACTCTGAGGAACAAAGATGTCATAGGAGCTTTGA
AGAGACTTCTGAGGAAGGCCATTTCAACTAAGGGGATATGA

Translation (316 aa):
MSVNRISADFPEDFILMGFTKYPWLDLPLFFVLLTSYMFTLLGNIAIILVSQLDSQLQSPMYFFLTSLSF
LDLCFTTTTVPQMLFNLQGPNKNITYIGCMAQAYVFHWLGCTECVLLGIMALDRYVAVCKPLRYSVIMDH
RLCLQLSGAAWLTGLANSLLQSTLTIQLPLCGNRMLDHFFCELPGLIKMSCGDTTVNEVTLAVVATFFIM
GPLSMILVSYSYIAQTVFRMPSAAGRLKAFNTCSSHLLVVSLFYGPGIYIYMQPSEDGSQDLIKVLTLFY
CVITPMANPFIYTLRNKDVIGALKRLLRKAISTKGI


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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