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Report for CCDS30438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30438.1 Public Mus musculus X Dnaaf6 23 108 98 CCDS HistoryNCBI Gene:331537Re-query CCDS DB by CCDS ID:30438.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30438.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044806.2 ENSMUSP00000048754.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044806.2Link to Ensembl Protein Viewer:ENSMUSP00000048754.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000044806Re-query CCDS DB by Protein ID:ENSMUSP00000048754
Original member Current member NCBI NM_177921.3 NP_808589.1 Accepted alive Link to Nucleotide Sequence:NM_177921.3Link to Protein Sequence:NP_808589.1Re-query CCDS DB by Nucleotide ID:NM_177921Re-query CCDS DB by Protein ID:NP_808589Link to BLAST:NP_808589.1

Chromosomal Locations for CCDS 30438.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 140071135 140071302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 140074805 140074877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 140076946 140077051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 140082214 140082310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 140101623 140101708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 140105904 140106030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGGAATCGGAAATTGCAGAAGCTGAGAAGGTCAAAACAGGGAATTTGGAAGCAAAAAGCATGGAAGCTA
AAAATATGCAATTTGAGATGCTGTCTTCTGCCTCAACCCTGCAAGCACTGGCCAGTCTCCTGAATCCTGA
AGAAGAGGATGATTTTGATTTTGAACAGGGACAATGTACATCTACTATTAGAGCTATGGGCCCTGGGAAT
ATTGGACCGCCTAAAGCAAAAGAGTCCAAAGCCATTCCTGAACCCAGGAGTGATGAAAGTGAAAACATCT
GGAATCCAGAAGAGGTTCCAGAAGGAGGAGAGCATGATGATATATGGGATGTTCGAGAAATCCCAGATTA
TGAGATTGTATTCCAACAAACTGTGGGAACTGAGGACATATACCTAGGATTGACAGGAAAGGATCCTTCA
ACAGCATGCTGCCAGGAGCTGGTGGTGAAAATTAAACTGCCCAATACGAACCCTTCTGAAATTCAAATTG
ACATCCAGGAAATGCTCCTTGATCTTCGCACTCCTAAAAAGAAGCTGTTAGTAAACTTTCCCCAGCCTGT
GGAACGGAACAGTGCTAGAGCATCCTATATCTGGGAAGCTGAAACACTTGAAGTCAGGATGACCCTCCAA
AGGGATTTGGATTTTAATATTTCCTGA

Translation (218 aa):
MESEIAEAEKVKTGNLEAKSMEAKNMQFEMLSSASTLQALASLLNPEEEDDFDFEQGQCTSTIRAMGPGN
IGPPKAKESKAIPEPRSDESENIWNPEEVPEGGEHDDIWDVREIPDYEIVFQQTVGTEDIYLGLTGKDPS
TACCQELVVKIKLPNTNPSEIQIDIQEMLLDLRTPKKKLLVNFPQPVERNSARASYIWEAETLEVRMTLQ
RDLDFNIS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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