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Report for CCDS52795.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52795.1 Public Mus musculus 9 AI593442 23 108 98 CCDS HistoryNCBI Gene:330941Re-query CCDS DB by CCDS ID:52795.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52795.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098768.2 ENSMUSP00000096365.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098768.2Link to Ensembl Protein Viewer:ENSMUSP00000096365.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098768Re-query CCDS DB by Protein ID:ENSMUSP00000096365
Original member Current member EBI ENSMUST00000213937.1 ENSMUSP00000149532.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213937.1Link to Ensembl Protein Viewer:ENSMUSP00000149532.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213937Re-query CCDS DB by Protein ID:ENSMUSP00000149532
Original member Current member NCBI NM_001286641.1 NP_001273570.1 Accepted alive Link to Nucleotide Sequence:NM_001286641.1Link to Protein Sequence:NP_001273570.1Re-query CCDS DB by Nucleotide ID:NM_001286641Re-query CCDS DB by Protein ID:NP_001273570Link to BLAST:NP_001273570.1
Original member Current member NCBI NM_178906.5 NP_849237.2 Accepted alive Link to Nucleotide Sequence:NM_178906.5Link to Protein Sequence:NP_849237.2Re-query CCDS DB by Nucleotide ID:NM_178906Re-query CCDS DB by Protein ID:NP_849237Link to BLAST:NP_849237.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273570.1 199 Q32M26 199 100% 0 0
NP_849237.2 199 Q32M26 199 100% 0 0

Chromosomal Locations for CCDS 52795.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 52677676 52678275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGAGTGCCAGGGCGCCGAAAGAGCTGAGGCTGGCCCTGCCGCCTTGTCTCCTGAACCGGACCTTTGCTT
CCCACAACGCCAGTGGAGGCAGCAGCGCAGGTCTCCGCAGCTCAGGCGCAGGTGGTGGCACTTGCATCAC
GCAGGTGGGACAGCAGCTCTTCCAGTCTTTTTCATCTACGCTGGTGCTGATTGTCCTGGTCACTCTCATC
TTCTGTCTCCTCGTGCTGTCCCTCTCCACTTTCCACATCCACAAGCGTAGGATGAAGAAGCGGAAGATGC
AGAGGGCTCAGGAAGAATATGAGCGAGATCATTGCAGCGGCAGCCACGGTGGTGGGGGGCTGCCTCGGGC
AGGTGTTCAAGCTCCAACCCATGGAAAAGAAACCCGACTGGAGAGGCAGCCCCGGGACTCCGCTTTCTGC
ACCCCCTCCAATGCTACTTCTTCTTCCTCCTCCTCCTCCTCATCCCCTGGTCTCCTGTGCCAGGGTCCCT
GTGCGCCTCCGCCTCCACTGCCAGCCCCCACTCCACAAGGAGCACCCGCAGCTTCCTCCTGCTTGGACAC
ACCTGGCGAGGGCCTTTTGCAAACGGTGGTACTGTCCTGA

Translation (199 aa):
MSARAPKELRLALPPCLLNRTFASHNASGGSSAGLRSSGAGGGTCITQVGQQLFQSFSSTLVLIVLVTLI
FCLLVLSLSTFHIHKRRMKKRKMQRAQEEYERDHCSGSHGGGGLPRAGVQAPTHGKETRLERQPRDSAFC
TPSNATSSSSSSSSSPGLLCQGPCAPPPPLPAPTPQGAPAASSCLDTPGEGLLQTVVLS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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